1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaatattcaaatgccattctattaggaactcaaaatgcattaccaacaaatgcattcttgtgtgtaacacggttgctacgatgtgcctgtttttgtacagTTGGATATGGTCCGTACTTCGGCAAGAAGCTGGACCCAGAGCCAGGGCGGTGCCGGCGTACGGACGGCAAGAAATGGCGGTGCTCGAAGGAGGCCGCGCC
species | Oryza sativa |
transcript | LOC_Os02g47280.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGCCGCGGACTCGACTCCCTCGCCGCCCGCTTCTACAACCATCCCGCCC TTGGATATGGTCCGTACTTCGGCAAGAAGCTGGACCCAGAGCCAGGGCGGTEST: gi|58659411|gb|CK048091.1|CK048091
genomic: CCGCCGCGGACTCGACTCCCTCGCCGCCCGCTTCTACAACCATCCCGCCCgtacgtcgtg ... ttttgtacagTTGGATATGGTCCGTACTTCGGCAAGAAGCTGGACCCAGAGCCAGGGCGGT
EST: CCGCCGCGGACTCGACTCCCTCGCCGCCCGCTTCTACAACCATCCCGCCC TTGGATATGGTCCGTACTTCGGCAAGAAGCTGGACCCAGAGCCAGGGCGGTEST: gi|58684843|gb|CK073530.1|CK073530
genomic: CCGCCGCGGACTCGACTCCCTCGCCGCCCGCTTCTACAACCATCCCGCCCgtacgtcgtg ... ttttgtacagTTGGATATGGTCCGTACTTCGGCAAGAAGCTGGACCCAGAGCCAGGGCGGT
EST: CCGCCGCGGACTCGACTCCCTCGCCGCCCGCTTCTACAACCATCCCGCCC TTGGATATGGTCCGTACTTCGGCAAGAAGCTGGACCCAGAGCCAGGGCGGT
genomic: CCGCCGCGGACTCGACTCCCTCGCCGCCCGCTTCTACAACCATCCCGCCCgtacgtcgtg ... ttttgtacagTTGGATATGGTCCGTACTTCGGCAAGAAGCTGGACCCAGAGCCAGGGCGGT
acaaatgcattcttgtgtgtaacacggttgctacgatgtgcctgtttttgtacagTTGGATATGGTCCGTACTTCGGCAAGAAGCTGGACCCAGAGCCAGGGCGGTGCCGGCGTACGGACGGCAAGAAATGGCGGTGCTCGAAGGAGGCCGCGCC
gtgtaac putative branch site (score: 8)
cctgttttt putative PPT
tttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatattcaaatgccattctattaggaactcaaaatgcattaccaacaaatgcattcttgtgtgtaacacggttgctacgatgtgcctgtttttgtacagTTGGATATGGTCCGTACTTCGGCAAGAAGCTGGACCCAGAGCCAGGGCGGTGCCGGCGTACGGACGGCAAGAAATGGCGGTGCTCGAAGGAGGCCGCGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - gccattc
- - - - - - - - - - - - - -actcaaa
- - - - - - - - - - - - - - - - - atgcatt
- - - - - - - - - - - - - - - - - - - - - -caacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cggttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcctg