1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtacttaaggatgtcatataccgcaaaagtttaattagctctgtatcgcttttgttaagtctcccatgttcttccagGAGTGCAATCTCTACCAACTTATGAAGGATAGAGTCAAGCCTTTCTCAGAGGCAGAAGTCCGGAATTGGTGCTTTCAGATTTTTCAGGCTCTTGCATACA
species | Oryza sativa |
transcript | LOC_Os02g47220.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGAGGTTATAAGGGAAAATGACATATTATACTTCATAATGGAATACATG GAGTGCAATCTCTACCAACTTATGAAGGATAGAGTCAAGCCTTTCTCAGAGEST: gi|33797218|gb|CF324473.1|CF324473
genomic: AGGAGGTTATAAGGGAAAATGACATATTATACTTCATAATGGAATACATGgtacttaagg ... gttcttccagGAGTGCAATCTCTACCAACTTATGAAGGATAGAGTCAAGCCTTTCTCAGAG
EST: AGGAGGTTATAAGGGAAAATGACATATTATACTTCATAATGGAATACATG GAGTGCAATCTCTACCAACTTATGAAGGATAGAGTCAAGCCTTTCTCAGAGEST: gi|88406810|gb|CI604004.1|CI604004
genomic: AGGAGGTTATAAGGGAAAATGACATATTATACTTCATAATGGAATACATGgtacttaagg ... gttcttccagGAGTGCAATCTCTACCAACTTATGAAGGATAGAGTCAAGCCTTTCTCAGAG
EST: AGGAGGTTATAAGGGAAAATGACATATTATACTTCATAATGGAATACATG GAGTGCAATCTCTACCAACTTATGAAGGATAGAGTCAAGCCTTTCTCAGAG
genomic: AGGAGGTTATAAGGGAAAATGACATATTATACTTCATAATGGAATACATGgtacttaagg ... gttcttccagGAGTGCAATCTCTACCAACTTATGAAGGATAGAGTCAAGCCTTTCTCAGAG
gcaaaagtttaattagctctgtatcgcttttgttaagtctcccatgttcttccagGAGTGCAATCTCTACCAACTTATGAAGGATAGAGTCAAGCCTTTCTCAGAGGCAGAAGTCCGGAATTGGTGCTTTCAGATTTTTCAGGCTCTTGCATACA
gtttaat putative branch site (score: 4)
tctcccatgttcttcc putative PPT
agtttaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttaaggatgtcatataccgcaaaagtttaattagctctgtatcgcttttgttaagtctcccatgttcttccagGAGTGCAATCTCTACCAACTTATGAAGGATAGAGTCAAGCCTTTCTCAGAGGCAGAAGTCCGGAATTGGTGCTTTCAGATTTTTCAGGCTCTTGCATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT