1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agttaagcggcgcactgtttgcatgtgtgcatcgttttatgtttgtttagaattattcttgaaggccttgacacctttttattttgtgtgtgttgtgcagTGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGGTGTTGTTCCTGACGAGGGTGCTGCAGCAGAGCAACGGCGACGCCGCCAA
species | Oryza sativa |
transcript | LOC_Os02g46460.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCTCGCCGGCGG-CTTATTCTTC TGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGGEST: gi|87005457|gb|CI285679.1|CI285679
genomic: GGCTCGCCGGCGGCCTTATTCTTCgtaagtactt ... tgttgtgcagTGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGG
EST: GGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTC TGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGGEST: gi|88367456|gb|CI566422.1|CI566422
genomic: GGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTCgtaagtactt ... tgttgtgcagTGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGG
EST: GGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTC TGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGGEST: gi|88591225|gb|CI708147.1|CI708147
genomic: GGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTCgtaagtactt ... tgttgtgcagTGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGG
EST: GGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTC TGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGGEST: gi|88301127|gb|CI594653.1|CI594653
genomic: GGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTCgtaagtactt ... tgttgtgcagTGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGG
EST: GGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTC TGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGGEST: gi|13536854|gb|AU181076.1|AU181076
genomic: GGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTCgtaagtactt ... tgttgtgcagTGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGG
EST: GGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTC TGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAAC-TAGEST: gi|88357991|gb|CI650727.1|CI650727
genomic: GGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTCgtaagtactt ... tgttgtgcagTGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCT-G
EST: GGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTC TGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGG
genomic: GGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTCgtaagtactt ... tgttgtgcagTGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGG
tttagaattattcttgaaggccttgacacctttttattttgtgtgtgttgtgcagTGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGGTGTTGTTCCTGACGAGGGTGCTGCAGCAGAGCAACGGCGACGCCGCCAA
ccttgac putative branch site (score: 16)
tttttattttgtgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttaagcggcgcactgtttgcatgtgtgcatcgttttatgtttgtttagaattattcttgaaggccttgacacctttttattttgtgtgtgttgtgcagTGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGGTGTTGTTCCTGACGAGGGTGCTGCAGCAGAGCAACGGCGACGCCGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - -gcactgt
- - - - - - - - - -tgcatgt
- - - - - - - - - - - - - gtgcatc
- - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - attcttg