1 5' 3' | 2 5' 3' |
...ttagcatatactctgattcttgtcatcttctttaaccatcccatagtactgtctgctagttgaagtactgataggaattggaatgtgcaaaactgatcagGTTTTACGCCGCTGAGGTGCTCCTAGCTCTGGAGTACCTGCACATGCTGGGCGTCGTCTACCGGGACCTGAAGCCGGAGAACGTCCTGGTGCGCGATGAC
species | Oryza sativa |
transcript | LOC_Os02g43740.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
gtactgtctgctagttgaagtactgataggaattggaatgtgcaaaactgatcagGTTTTACGCCGCTGAGGTGCTCCTAGCTCTGGAGTACCTGCACATGCTGGGCGTCGTCTACCGGGACCTGAAGCCGGAGAACGTCCTGGTGCGCGATGAC
tactgat putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagcatatactctgattcttgtcatcttctttaaccatcccatagtactgtctgctagttgaagtactgataggaattggaatgtgcaaaactgatcagGTTTTACGCCGCTGAGGTGCTCCTAGCTCTGGAGTACCTGCACATGCTGGGCGTCGTCTACCGGGACCTGAAGCCGGAGAACGTCCTGGTGCGCGATGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - ctgattc
- - - - - - - - - - - -catcttc
- - - - - - - - - - - - - - - - - -ccatccc
- - - - - - - - - - - - - - - - - - - - - - - - - - ctgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgtgc