1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttagattgctttcagtttgttataccttctaaagttcttctgtgcagtgtcagatgtgttttgtgctgtatccttatttttctattttcgtgtacgtagATTCGCAGGTTGAGAATACAACAAAGAATAAAGAATGTTGAACTTGGGATCTCAGTTGATGTGCCTGAAGGGGAACTTCCTGATTTTCCATCATTCATTC
species | Oryza sativa |
transcript | LOC_Os02g43500.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAACAAGATC-TC-TGCATATGGAGGAG A-TCGCAGGTTGAGAATACAACAAAGAATAAAGAATGTTGAACTTGGGATCEST: gi|218491083|gb|FG953112.1|FG953112
genomic: GAACAAGATCTTCTTGCATATGGAGGAGgtatgtcgac ... gtgtacgtagATTCGCAGGTTGAGAATACAACAAAGAATAAAGAATGTTGAACTTGGGATC
EST: AGGATAATATTAGGAGCCGCCGGAACAAGATCTTCTTGCATATGGAGGAG ATTCGCAGGTTGAGAATACAACAAAGAATAAAGAATGTTGAACTTGGGATCEST: gi|13422398|gb|AU176457.1|AU176457
genomic: AGGATAATATTAGGAGCCGCCGGAACAAGATCTTCTTGCATATGGAGGAGgtatgtcgac ... gtgtacgtagATTCGCAGGTTGAGAATACAACAAAGAATAAAGAATGTTGAACTTGGGATC
EST: AGGATAATATTAGGAGCCGCCGGAACAAGATCTTCTTGCATATGGAGGAG ATTCGCAGGTTGAGAATACAACAAAGAATAAAGAATGTTGAACTTGGGATC
genomic: AGGATAATATTAGGAGCCGCCGGAACAAGATCTTCTTGCATATGGAGGAGgtatgtcgac ... gtgtacgtagATTCGCAGGTTGAGAATACAACAAAGAATAAAGAATGTTGAACTTGGGATC
cagtgtcagatgtgttttgtgctgtatccttatttttctattttcgtgtacgtagATTCGCAGGTTGAGAATACAACAAAGAATAAAGAATGTTGAACTTGGGATCTCAGTTGATGTGCCTGAAGGGGAACTTCCTGATTTTCCATCATTCATTC
tccttatttttctatt CT-rich tract
ttatttttctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagattgctttcagtttgttataccttctaaagttcttctgtgcagtgtcagatgtgttttgtgctgtatccttatttttctattttcgtgtacgtagATTCGCAGGTTGAGAATACAACAAAGAATAAAGAATGTTGAACTTGGGATCTCAGTTGATGTGCCTGAAGGGGAACTTCCTGATTTTCCATCATTCATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - -tgctttc
- - - - - - - - - - - - - - - - - - - - ctgtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgctg