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gtactgatgaatgcacttcattacttcaatcaactaatgaacatactcggttatatctttaatagatataatatagtttcttgtgtatatcagCATTCAGCAGGCCAGCTGAGGAATCGGAAGAATTCAAACTCTGGTGGGGCCAAAGTTTCAGAAAGTACCGATATAGTTACATTTGCTGATGTGGCTGGAG
species | Oryza sativa |
transcript | LOC_Os02g43350.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGTATTAATTGCTGTAGTTCTGCAGCGATTGCCAATAAGCTTTTCTCAG CATTCAGCAGGCCAGCTGAGGAATCGGAAGAATTCAAACTCTGGTGGGGCCEST: gi|58688521|gb|CK077208.1|CK077208
genomic: TTGTATTAATTGCTGTAGTTCTGCAGCGATTGCCAATAAGCTTTTCTCAGgtactgatga ... tgtatatcagCATTCAGCAGGCCAGCTGAGGAATCGGAAGAATTCAAACTCTGGTGGGGCC
EST: TTGTATTAATTGCTGTAGTTCTGCAGCGATTGCCAATAAGCTTTTCTCAG CATTCAGCAGGCCAGCTGAGGAATCGGAAGAATTCAA-CTCTGGTGGGGCCEST: gi|29630418|gb|CB635427.1|CB635427
genomic: TTGTATTAATTGCTGTAGTTCTGCAGCGATTGCCAATAAGCTTTTCTCAGgtactgatga ... tgtatatcagCATTCAGCAGGCCAGCTGAGGAATCGGAAGAATTCAAACTCTGGTGGGGCC
EST: TTGTATTAATTGCTGTAGTTCTGCAGCGATTGCCAATAAGCTTTTCTCAG CATTCAGCAGGCCAGCTGAGGAATCGGAAGAATTCAAACTCTGGTGGGGCCEST: gi|29630416|gb|CB635425.1|CB635425
genomic: TTGTATTAATTGCTGTAGTTCTGCAGCGATTGCCAATAAGCTTTTCTCAGgtactgatga ... tgtatatcagCATTCAGCAGGCCAGCTGAGGAATCGGAAGAATTCAAACTCTGGTGGGGCC
EST: TTGTATTAATTGCTGTAGTTCTGCAGCGATTGCCAATAAGCTTTTCTCAG CATTCAGCAGGCCAGCTGAGGAATCGGAAGAATTCAAACTCTGGTGGGGCC
genomic: TTGTATTAATTGCTGTAGTTCTGCAGCGATTGCCAATAAGCTTTTCTCAGgtactgatga ... tgtatatcagCATTCAGCAGGCCAGCTGAGGAATCGGAAGAATTCAAACTCTGGTGGGGCC
gaacatactcggttatatctttaatagatataatatagtttcttgtgtatatcagCATTCAGCAGGCCAGCTGAGGAATCGGAAGAATTCAAACTCTGGTGGGGCCAAAGTTTCAGAAAGTACCGATATAGTTACATTTGCTGATGTGGCTGGAG
ctttaat putative branch site (score: 28)
tttcttgt putative PPT
ttatatctttaataga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgatgaatgcacttcattacttcaatcaactaatgaacatactcggttatatctttaatagatataatatagtttcttgtgtatatcagCATTCAGCAGGCCAGCTGAGGAATCGGAAGAATTCAAACTCTGGTGGGGCCAAAGTTTCAGAAAGTACCGATATAGTTACATTTGCTGATGTGGCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA