1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgtgttgtgattgcacataactgatacggaataggtggctcaaatgcagcgacaacatgactaatagttcatgcttcttcgtggttttgcttagtgcagGTATAAGGCATCGAATGATGGTAAATTCCCCACGATGACGACTGTTCGTCAACATGTTGGAGGGGGTCACTACACGGTGAGGGAGATAGTTCAGGAACTT
species | Oryza sativa |
transcript | LOC_Os02g42550.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGATGACCAAGCAGGAGAGGAGGGTTAAAATAGAGAAATTTGTTGAGGA GTATAAGGCATCGAATGATGGTAAATTCCCCACGATGACGACTGTTCGTCAEST: gi|88316795|gb|CI624237.1|CI624237
genomic: AGGATGACCAAGCAGGAGAGGAGGGTTAAAATAGAGAAATTTGTTGAGGAgtaggtggct ... cttagtgcagGTATAAGGCATCGAATGATGGTAAATTCCCCACGATGACGACTGTTCGTCA
EST: AGGATGACCAAGCAGGAGAGGAGGGTTAAAATAGAGAAATTTGTTGAGGA GTATAAGGCATCGAATGATGGTAAATTCCCCACGATGACGACTGTTCGTCAEST: gi|88442820|gb|CI694223.1|CI694223
genomic: AGGATGACCAAGCAGGAGAGGAGGGTTAAAATAGAGAAATTTGTTGAGGAgtaggtggct ... cttagtgcagGTATAAGGCATCGAATGATGGTAAATTCCCCACGATGACGACTGTTCGTCA
EST: AGGATGACCAAGCAGGAGAGGAGGGTTAAAATACAGAAATTTGTTGAGGA GTATAAGGCATCGAATGATGGTAAATTCCCCACGATGACGACTGTTCGTCAEST: gi|88321827|gb|CI672972.1|CI672972
genomic: AGGATGACCAAGCAGGAGAGGAGGGTTAAAATAGAGAAATTTGTTGAGGAgtaggtggct ... cttagtgcagGTATAAGGCATCGAATGATGGTAAATTCCCCACGATGACGACTGTTCGTCA
EST: AGGATGACCAAGCAGGAGAGGAGGGTTAAAATAGAGAAATTTGTTGAGGA GTATAAGGCATCGAATGATGGTAAATTCCCCACGATGACGACTGTTCGTCAEST: gi|88718861|gb|CI742371.1|CI742371
genomic: AGGATGACCAAGCAGGAGAGGAGGGTTAAAATAGAGAAATTTGTTGAGGAgtaggtggct ... cttagtgcagGTATAAGGCATCGAATGATGGTAAATTCCCCACGATGACGACTGTTCGTCA
EST: AGGATGACCAAGCAGGAGAGGAGGGTTAAAATAGAGAAATTTGTTGAGGA GTATAAGGCATCGAATGATGGTAAATTCCCCACGATGACGACTGTTCGTCEST: gi|86851008|gb|CI311226.1|CI311226
genomic: AGGATGACCAAGCAGGAGAGGAGGGTTAAAATAGAGAAATTTGTTGAGGAgtaggtggct ... cttagtgcagGTATAAGGCATCGAATGATGGTAAATTCCCCACGATGACGACTGTTCGTC
EST: AGGATGACCAAGCAGGAGAGGAGGGTTAAAATAGAGAAATTTGTTGAGGA GTATAAGGCATCGAATGATGGTAAATTCCCCACGATGACGACTGTTCGTCAEST: gi|58686708|gb|CK075395.1|CK075395
genomic: AGGATGACCAAGCAGGAGAGGAGGGTTAAAATAGAGAAATTTGTTGAGGAgtaggtggct ... cttagtgcagGTATAAGGCATCGAATGATGGTAAATTCCCCACGATGACGACTGTTCGTCA
EST: AGGATGACCAAGCAGGAGAGGAGGGTTAAAATAGAGAAATTTGTTGAGGA GTATAAGGCATCGAATGATGGTAAATTCCCCACAATGACGAGTGTTCGTCA
genomic: AGGATGACCAAGCAGGAGAGGAGGGTTAAAATAGAGAAATTTGTTGAGGAgtaggtggct ... cttagtgcagGTATAAGGCATCGAATGATGGTAAATTCCCCACGATGACGACTGTTCGTCA
tgcagcgacaacatgactaatagttcatgcttcttcgtggttttgcttagtgcagGTATAAGGCATCGAATGATGGTAAATTCCCCACGATGACGACTGTTCGTCAACATGTTGGAGGGGGTCACTACACGGTGAGGGAGATAGTTCAGGAACTT
gactaat putative branch site (score: 3)
ttttgctt putative PPT
taatagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtgttgtgattgcacataactgatacggaataggtggctcaaatgcagcgacaacatgactaatagttcatgcttcttcgtggttttgcttagtgcagGTATAAGGCATCGAATGATGGTAAATTCCCCACGATGACGACTGTTCGTCAACATGTTGGAGGGGGTCACTACACGGTGAGGGAGATAGTTCAGGAACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
-tgtgttg
- - - - tgattgc
- - - - - - - - - - -ctgatac
- - - - - - - - - - - - - - - - - - - - - - atgcagc
- - - - - - - - - - - - - - - - - - - - - - - - - -gacaaca