1 5' 3' | 2 5' 3' | 3 5' 3' |
...tctgttttgtcattggctgtttgacatcagtatatgtcgaacatataacatgtttgcatgatgatttttgccttaacgtttttgttgatgtgttcatcagGTGTTGGCTCCTCTCCCAATTGGATTCGCGGTGTTCATGGTCCATCTGGCCACCATCCCCATCACCGGCACCGGCATTAACCCGGCGAGGAGCTTGGGAA
species | Oryza sativa |
transcript | LOC_Os02g41860.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTTCTCCGCCACCGACCCCAAGCGCAACGCCCGCGACTCCCACATCCCG GTGTTGGCTCCTCTCCCAATTGGATTCGCGGTGTTCATGGTCCATCTGGCCEST: gi|88728425|gb|CI751935.1|CI751935
genomic: TCTTCTCCGCCACCGACCCCAAGCGCAACGCCCGCGACTCCCACATCCCGgtgagttaat ... tgttcatcagGTGTTGGCTCCTCTCCCAATTGGATTCGCGGTGTTCATGGTCCATCTGGCC
EST: TCTTCTCCGCAACCGACCCCAAGCGCAACGCCCGCGACTCCCACATCCNG GTGTTGGCTCCTCTCCCAATTGGATTCGCGGTGTTCATGGTCCATCTGGCCEST: gi|29644248|gb|CB649255.1|CB649255
genomic: TCTTCTCCGCCACCGACCCCAAGCGCAACGCCCGCGACTCCCACATCCCGgtgagttaat ... tgttcatcagGTGTTGGCTCCTCTCCCAATTGGATTCGCGGTGTTCATGGTCCATCTGGCC
EST: TCTTCTCCGCCACCGACCCCAAGCGCAACGCCCGCGACTCCCACATCCCG GTGTTGGCTCCTCTCCCAATTGGATTCGCGGTGTTCATGGTCCATCTGGCCEST: gi|117222050|gb|CT852596.1|CT852596
genomic: TCTTCTCCGCCACCGACCCCAAGCGCAACGCCCGCGACTCCCACATCCCGgtgagttaat ... tgttcatcagGTGTTGGCTCCTCTCCCAATTGGATTCGCGGTGTTCATGGTCCATCTGGCC
EST: TCTTCTCCGCCACCGACCCCAAGCGCAACGCCCGCGACTCCCACATCCCG GTGTTGGCTCCTCTCCCAATTGGATTCGCGGTGTTCATGGTCCATCTGGCCEST: gi|29686713|gb|CB682988.1|CB682988
genomic: TCTTCTCCGCCACCGACCCCAAGCGCAACGCCCGCGACTCCCACATCCCGgtgagttaat ... tgttcatcagGTGTTGGCTCCTCTCCCAATTGGATTCGCGGTGTTCATGGTCCATCTGGCC
EST: TCTTCTCCGCCACCGACCCCAAGCGCAACGCCCGCGACTCCCACATCCCG GTGTTGGCTCCTCTCCCAATTGGATTCGCGGTGTTCATGGTCCATCTGGCCEST: gi|58613123|gb|CK040835.1|CK040835
genomic: TCTTCTCCGCCACCGACCCCAAGCGCAACGCCCGCGACTCCCACATCCCGgtgagttaat ... tgttcatcagGTGTTGGCTCCTCTCCCAATTGGATTCGCGGTGTTCATGGTCCATCTGGCC
EST: TCTTCTCCGCCACCGACCCCAAGCGCAACGCCCGCGACTCCCACATCCCG GTGTTGGCTCCTCTCCCAATTGGATTCGCGGTGTTCATGGTCCATCTGGCCEST: gi|29687215|gb|CB683490.1|CB683490
genomic: TCTTCTCCGCCACCGACCCCAAGCGCAACGCCCGCGACTCCCACATCCCGgtgagttaat ... tgttcatcagGTGTTGGCTCCTCTCCCAATTGGATTCGCGGTGTTCATGGTCCATCTGGCC
EST: TCTTCTCCGCCACCGACCCCAAGCGCAACGCCCGCGACTCCCACATCCCG GTGTTGGCTCCTCTCCCAATTGGATTCGCGGTGTTCATGGTCCATCTGGCC
genomic: TCTTCTCCGCCACCGACCCCAAGCGCAACGCCCGCGACTCCCACATCCCGgtgagttaat ... tgttcatcagGTGTTGGCTCCTCTCCCAATTGGATTCGCGGTGTTCATGGTCCATCTGGCC
taacatgtttgcatgatgatttttgccttaacgtttttgttgatgtgttcatcagGTGTTGGCTCCTCTCCCAATTGGATTCGCGGTGTTCATGGTCCATCTGGCCACCATCCCCATCACCGGCACCGGCATTAACCCGGCGAGGAGCTTGGGAA
atgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgttttgtcattggctgtttgacatcagtatatgtcgaacatataacatgtttgcatgatgatttttgccttaacgtttttgttgatgtgttcatcagGTGTTGGCTCCTCTCCCAATTGGATTCGCGGTGTTCATGGTCCATCTGGCCACCATCCCCATCACCGGCACCGGCATTAACCCGGCGAGGAGCTTGGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT