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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttctctattgttccattccactagcagttttgttttaaaattactcttttcagatatgctggtttaatcttatttgttctcactcttctaaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCACTGGGAATTTCCATCCAGAGTTTTAATGGTGATCTGCTGTATGAGCCATG

Basic information

species Oryza sativa
transcript LOC_Os02g41550.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29674937|gb|CB671212.1|CB671212
EST:     GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATG                         ACCCTGTTTCTCTTGTGCGTGATGACAAAATNNNNNNNGAGCTTTCGGCAC
genomic: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATGgtatggctac ... taaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCAC
EST: gi|29629647|gb|CB634656.1|CB634656
EST:     GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATG                         ACCCTGTTTCTCTTGTGCGTGATGACAAAATNNNNNNNGAGCTTTCGGCAC
genomic: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATGgtatggctac ... taaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCAC
EST: gi|29671259|gb|CB667534.1|CB667534
EST:     GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATG                         ACCCTGTTTCTCTTGTGCGTGATGACAAAATNNNNNNNGAGCTTTCGGCAC
genomic: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATGgtatggctac ... taaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCAC
EST: gi|29627388|gb|CB632399.1|CB632399
EST:     GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATG                         ACCCTGTTTCTCTTGTGCGTGATGACAAAATNNNNNNNGAGCTTTCGGCAC
genomic: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATGgtatggctac ... taaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCAC
EST: gi|29635139|gb|CB640148.1|CB640148
EST:     GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATG                         ACCCTGTTTCTCTTGTGCGTGATGACAAAATNNNNNNNGAGCTTTCGGCAC
genomic: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATGgtatggctac ... taaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCAC
EST: gi|29675695|gb|CB671970.1|CB671970
EST:     GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATG                         ACCCTGTTTCTCTTGTGCGTGATGACAAAATNNNNNNNGAGCTTTCGGCAC
genomic: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATGgtatggctac ... taaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCAC
EST: gi|29641884|gb|CB646891.1|CB646891
EST:     GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATG                         ACCCTGTTTCTCTTGTGCGTGATGACAAAATNNNNNNNGAGCTTTCGGCAC
genomic: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATGgtatggctac ... taaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCAC
EST: gi|29668745|gb|CB665020.1|CB665020
EST:     GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATG                         ACCCTGTTTCTCTTGTGCGTGATGACAAAATNNNNNNNGAGCTTTCGGCAC
genomic: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATGgtatggctac ... taaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttttcagatatgctggtttaatcttatttgttctcactcttctaaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCACTGGGAATTTCCATCCAGAGTTTTAATGGTGATCTGCTGTATGAGCCATG
                                          ttctaaa  putative branch site (score: 2)
                        tcttatttgttctcac  CT-rich tract
                   tttaatcttatttgtt  TA-rich tract