1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgttctctattgttccattccactagcagttttgttttaaaattactcttttcagatatgctggtttaatcttatttgttctcactcttctaaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCACTGGGAATTTCCATCCAGAGTTTTAATGGTGATCTGCTGTATGAGCCATG
species | Oryza sativa |
transcript | LOC_Os02g41550.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATG ACCCTGTTTCTCTTGTGCGTGATGACAAAATNNNNNNNGAGCTTTCGGCACEST: gi|29674937|gb|CB671212.1|CB671212
genomic: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATGgtatggctac ... taaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCAC
EST: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATG ACCCTGTTTCTCTTGTGCGTGATGACAAAATNNNNNNNGAGCTTTCGGCACEST: gi|29629647|gb|CB634656.1|CB634656
genomic: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATGgtatggctac ... taaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCAC
EST: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATG ACCCTGTTTCTCTTGTGCGTGATGACAAAATNNNNNNNGAGCTTTCGGCACEST: gi|29682325|gb|CB678600.1|CB678600
genomic: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATGgtatggctac ... taaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCAC
EST: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATG ACCCTGTTTCTCTTGTGCEST: gi|29671259|gb|CB667534.1|CB667534
genomic: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATGgtatggctac ... taaattttagACCCTGTTTCTCTTGTGC
EST: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATG ACCCTGTTTCTCTTGTGCGTGATGACAAAATNNNNNNNGAGCTTTCGGCACEST: gi|29622509|gb|CB627520.1|CB627520
genomic: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATGgtatggctac ... taaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCAC
EST: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATG ACCCTGTTTCTCTTEST: gi|29627388|gb|CB632399.1|CB632399
genomic: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATGgtatggctac ... taaattttagACCCTGTTTCTCTT
EST: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATG ACCCTGTTTCTCTTGTGCGTGATGACAAAATNNNNNNNGAGCTTTCGGCACEST: gi|29635139|gb|CB640148.1|CB640148
genomic: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATGgtatggctac ... taaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCAC
EST: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATG ACCCTGTTTCTCTTGTGCGTGATGACAAAATNNNNNNNGAGCTTTCGGCACEST: gi|29641884|gb|CB646891.1|CB646891
genomic: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATGgtatggctac ... taaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCAC
EST: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATG ACCCTGTTTCTCTTGTGCGTGATGACAAAATNNNNNNNGAGCTTTCGGCACEST: gi|29668745|gb|CB665020.1|CB665020
genomic: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATGgtatggctac ... taaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCAC
EST: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATG ACCCTGTTTCTCTTGTGCGTGATGACAAAATNNNNNNNGAGCTTTCGGCACEST: gi|29678609|gb|CB674884.1|CB674884
genomic: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATGgtatggctac ... taaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCAC
EST: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATG ACCCTGTTTCTCTTGTGCGTGATGACAAAAT
genomic: GTGCATTGATTCTGTCGGCGCCACCAGATTGGTTTATAATCATCTGTATGgtatggctac ... taaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAAT
ctcttttcagatatgctggtttaatcttatttgttctcactcttctaaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCACTGGGAATTTCCATCCAGAGTTTTAATGGTGATCTGCTGTATGAGCCATG
ttctaaa putative branch site (score: 15)
tcttatttgttctcac CT-rich tract
tttaatcttatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttctctattgttccattccactagcagttttgttttaaaattactcttttcagatatgctggtttaatcttatttgttctcactcttctaaattttagACCCTGTTTCTCTTGTGCGTGATGACAAAATAAAAAAAGAGCTTTCGGCACTGGGAATTTCCATCCAGAGTTTTAATGGTGATCTGCTGTATGAGCCATG
- - - - - - - ccattcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgctg