1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgttcttattggtaaacctgtgacacatgctagtctgtactgtatgtttgctattgagtgcaagagctctgttctatttgtttcctgaacttagtaatagATATGAAGAAGCGAAAGCCAAAGGTATGGACAATTATGACCGTGAATTGGAAGAAACTATAGAAAGACTAATATCGGAGTGTGAAAGGAAGATTCAGAGA
species | Oryza sativa |
transcript | LOC_Os02g39300.1 |
intron # | 2 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: ATGGACATGGGGCCATGCCCGAAGATGCACTCGCTGCAGCTGCGCAAGGA ATATGAAGAAGCGAAAGCCAAAGGTATGGACAATTATGACCGTGAATTGGAEST: gi|29688020|gb|CB684295.1|CB684295
genomic: ATGGACATGGGGCCATGCCCGAAGATGCACTCGCTGCAGCTGCGCAAGGAgtatccttgg ... ttagtaatagATATGAAGAAGCGAAAGCCAAAGGTATGGACAATTATGACCGTGAATTGGA
EST: ATGGACATGGGGCCATGCCCGAAGATGCACTCGCTGCAGCTGCGCAAGGA ATATGAAGAAGCGAAAGCCAAAGGTATGGACAATTATGACCGTGAATTGGA
genomic: ATGGACATGGGGCCATGCCCGAAGATGCACTCGCTGCAGCTGCGCAAGGAgtatccttgg ... ttagtaatagATATGAAGAAGCGAAAGCCAAAGGTATGGACAATTATGACCGTGAATTGGA
gtttgctattgagtgcaagagctctgttctatttgtttcctgaacttagtaatagATATGAAGAAGCGAAAGCCAAAGGTATGGACAATTATGACCGTGAATTGGAAGAAACTATAGAAAGACTAATATCGGAGTGTGAAAGGAAGATTCAGAGA
ttcctgaac putative branch site
tatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttcttattggtaaacctgtgacacatgctagtctgtactgtatgtttgctattgagtgcaagagctctgttctatttgtttcctgaacttagtaatagATATGAAGAAGCGAAAGCCAAAGGTATGGACAATTATGACCGTGAATTGGAAGAAACTATAGAAAGACTAATATCGGAGTGTGAAAGGAAGATTCAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
tgttctt
- - - - - - - - -ctgtgac
- - - - - - - - - - - - -catgcta
- - - - - - - - - - - - - - - - - -tgtactg
- - - - - - - - - - - - - - - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcaag