Sequence
atgc intronic sequence ATGC exonic sequence...ttcccacctatattgccctcgatgcgtatataaaaatggtcgttgccactgccaacggagctcgatctggaacatatattgcacacgctctggcacaaagGCAAATACAGTAGAAAACATATCATCGACGGCCGATCTCGAGCCAAGGCAAATGGATCCCGAGGAGATCGCCTTCGGCGAAGAGCCAGAGCCACCGCACG
Basic information
species | Oryza sativa |
transcript | LOC_Os02g38910.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccactgccaacggagctcgatctggaacatatattgcacacgctctggcacaaagGCAAATACAGTAGAAAACATATCATCGACGGCCGATCTCGAGCCAAGGCAAATGGATCCCGAGGAGATCGCCTTCGGCGAAGAGCCAGAGCCACCGCACG
aacatatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttcccacctatattgccctcgatgcgtatataaaaatggtcgttgccactgccaacggagctcgatctggaacatatattgcacacgctctggcacaaagGCAAATACAGTAGAAAACATATCATCGACGGCCGATCTCGAGCCAAGGCAAATGGATCCCGAGGAGATCGCCTTCGGCGAAGAGCCAGAGCCACCGCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - -tgccctc
- - - - - - - - - - - - - - -ataaaaa
- - - - - - - - - - - - - - - - - - - - - - gccactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacacgc