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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcagcagagctattctcatgcggtcatgcctataatcacctccataagtgactccattatactccatatgcacatcctaacttccaggtctattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGAAAGGGAAAAATCCTGTTACCTTTGATCACCTCAGTGTGAGGGGAAACAA

Basic information

species Oryza sativa
transcript LOC_Os02g37430.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g37430.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G416061_T01 (Zea mays), 3'ss of exon 3
tcagcagagctattctcatgcggtcatgcctataatcacctccataagtgactcca---ttatactccatatgcacatcctaacttccaggtctattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGAAAGGGAAAAATCCTGTTACCTTTGATCACCTCAGTGTGAGGGGAAACAA
|    |         | |     ||   | |   ||||  |     ||| |  | |   | ||  | ||   |   || || | ||   ||   | |||||||||||||| ||||||||||| || || ||||| |||||||| || ||| | ||||||||||||||||||||| |||||||||| |||||||||||||||||
tttttaacatcccattaaaattctctcccattccatcagattttacagtaatcctagaatgattattcagtagtgtattctgattttttgg---actttgtagGTGTTGACATCAGCATGAATACTCATCTGAAGACTGTGAAGCTGACACTAAAAGGGAAAAATCCTGTTACCCTTGATCACCTTAGTGTGAGGGGAAACAA

upper sequence: LOC_Os02g37430.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA18G52210.1 (Glycine max), 3'ss of exon 3
tcagc-agagctattctcatgcggtcatgcctataatcacctccataagtgactccattatactccatatgcacatcctaacttccaggtctattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGAAAGGGAAAAATCCTGTTACCTTTGATCACCTCAGTGTGAGGGGAAACAA-
  ||  ||  || ||   ||   |      |     | | || ||  |   |||  |  | |     | |   | | || | |    | | | |     ||||||||||||||| |||||||| ||  ||||||| || ||||| ||  |||||||||||||||| || ||  | ||||| |||||||||||||| ||||| 
--agtgagtcctcttactatattgctgcttcctagttgaactacaccaacaactttaagacaggaagtcttagcttactgattctgggatttttgccacaggTGTTGATATCAGTATGAACACACATTTGAAAACAGTTAAACTAACTCTGAAAGGGAAAAATCCAGTGACTCTGGATCATCTCAGTGTGAGGGGTAACAAC

upper sequence: LOC_Os02g37430.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA02G10640.1 (Glycine max), 3'ss of exon 3
tcagcagagctattctcatgcggtcatgcctataatcacctccataagtgactccattatactccatatgcacatcctaacttccaggtctattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGAAAGGGAAAAATCCTGTTACCTTTGATCACCTCAGTGTGAGGGGAAACAA
|   |||  || ||   ||   |            | | || ||  ||  |||  |  | |     | |   | | || | |    |   | |     ||||||||||||||| |||||||| ||  ||||||| || ||||| ||  |||||||||||||||| || ||  | ||||| |||||||||||||| |||||
tagtcagtccttttactatcttgcttctttctagttgaactacaccagcaactttaagagaggaagtcttagcttactgattctgggacttttgccacagGTGTTGATATCAGTATGAACACACATTTGAAAACAGTTAAACTAACTCTGAAAGGGAAAAATCCAGTCACTCTAGATCATCTCAGTGTGAGGGGTAACAA

upper sequence: LOC_Os02g37430.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA03G30880.1 (Glycine max), 3'ss of exon 2
-tcagcagagctattctcatgcggtcatgcctataatcacctccataagtgactccattatactccatatgcacatcctaacttccaggtctattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGAAAGGGAAAAATCCTGTTACCTTTGATCACCTCAGTGTGAGGGGAAACAA
 |  |  |   | |  || |   | | |   |   ||  | |     |     |         |   | | |  ||||            |||| |   ||||||||||||||| ||||| || ||  ||||||| || ||||| ||  ||||||||||||| || ||||| || ||||| ||||||||||| || |||||
gtttgacgttttgtg-tctttaagccttatttgggatgccattagagaagtgttttgcagctttagttgtactgatccatggacttgatgctatatcacagGTGTTGATATCAGTATGAATACACATTTGAAAACAGTTAAACTAACTCTGAAAGGGAAAAACCCAGTTACTTTGGATCATCTCAGTGTGAGAGGCAACAA

upper sequence: LOC_Os02g37430.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA19G33700.1 (Glycine max), 3'ss of exon 2
---tcagcagagctattctcatgcggtcatgcctataatcacctccataagtgactccattatactccatatgcacatcctaacttccaggtctattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGAAAGGGAAAAATCCTGTTACCTTTGATCACCTCAGTGTGAGGGGAAACAA
   |  || |   | |  || |   | | |   |   ||  ||   | ||||| ||         |   | | |  ||||            ||||  || ||||||||||||||| ||||| || ||  ||||||| || ||||| ||  ||||||||||||| || ||||| || ||||| ||||||||||| || |||||
aagtttgctgttttgtg-tctttaagccttatttgggat-gccgttagaagtg-ctttgcagctttagttgtactgatccatggacttgatgctatactgcagGTGTTGATATCAGTATGAATACACATTTGAAAACAGTTAAACTAACTCTGAAAGGGAAAAACCCAGTTACTTTGGATCATCTCAGTGTGAGAGGCAACAA

upper sequence: LOC_Os02g37430.1 (Oryza sativa), 3'ss of exon 2
lower sequence: AT4G02840.2 (Arabidopsis thaliana), 3'ss of exon 3
--------tcagcagagctattctcatgcggtcatgcctataatcacctccataagtgactccattatactccatatgcacatcctaacttccaggtctattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGAAAGGGAAAAATCCTGTTACCTTTGATCACCTCAGTGTGAGGGGAAACAA
        |  |      | ||||       || ||  || |||  |    || | | |   || |       |   | ||   |||  |   | | || |  || |||||| ||| | ||||||||||| ||  | ||| |||||||||||||  |||||||||| ||||| ||||| || || ||| | ||||| |||||||||||
tgtttggtttggtttcctttttctgccatcatcttgtttagaat-gcaattatcaatcaactcactg------actggtactatctacttgtgatgact-taatgcagGTGTAGATGTTAGCATGAACACTCATTTAAAAGCTGTGAAACTCACTCTGAAAGGGAAGAATCCAGTTACATTAGACCACTTAAGTGTCAGGGGAAACAA

upper sequence: LOC_Os02g37430.1 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv07s0104g00160.t01 (Vitis vinifera), 3'ss of exon 4
tcagcagagctattctcatgcggtcatgcctataatcacctccataagtgactccattatactccatatgcacatcctaacttccaggtctattt------tgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGAAAGGGAAAAATCCTGTTACCTTTGATCACCTCAGTGTGAGGGGAAACAA
  | || |   ||    | || ||  |      |||  | | ||| | |  |||  || |  |    | ||| || |||| |    | | |   |      | ||||||||||||| || |||||||| ||  |||| || |||||||| || ||||| ||||||||||| || ||  | |||||| | ||||| || || |||||
--atcaaatagataactaggcagttttaatgggaatt-catgcatgaatt-ctcagttgtgtt--gaaggcagattctaattagtggctttgcctgcttgttatagGTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGAAGGGGAAAAATCCAGTGACTCTAGATCACTTGAGTGTTAGAGGCAACAA

upper sequence: LOC_Os02g37430.1 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv19s0015g01330.t01 (Vitis vinifera), 3'ss of exon 2
--tcagcagagctattctcatgcg-gtcatgcctataatcacctcca-taagtgactccattatactccatatgcacatcctaacttccaggtctattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGAAAGGGAAAAATCCTGTTACCTTTGATCACCTCAGTGTGAGGGGAAACAA
  | |   ||  ||      | |  || ||| | | ||  |  |  | | |  ||       | |   ||| |||  ||  ||       |   ||| || ||||||| ||||| || |||||||| ||  |||| ||||||||||| ||  |||| ||||||||||| || ||  | |||||||| ||||||||||| |||||
agtaacttgaagtaggtaagtccatgttatgacaaaaactatttagaatcaaagatgattggagagatcat-tgctgatggtattgctttg---tatgttatagGTGTGGATATTAGTATGAACACACATTTGAAGACTGTGAAACTGACTCTGAAGGGGAAAAATCCAGTGACTATGGATCACCTGAGTGTGAGGGGCAACAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88503442|gb|CI430948.1|CI430948
EST:     CCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: CCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|15851431|gb|BI799707.1|BI799707
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|86827063|gb|CI268901.1|CI268901
EST:     AGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: AGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|4880073|gb|AU064372.1|AU064372
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|8956556|gb|BE230471.1|BE230471
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|58686818|gb|CK075505.1|CK075505
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|89199069|gb|CI255335.1|CI255335
EST:     GTAACGATCGAGCTCAAGAACGGCACCACCGTTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GTAACGATCGAGCTCAAGAACGGCACCACCG-TCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|88211519|gb|CI211159.1|CI211159
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|12622937|gb|AU173150.1|AU173150
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|88832522|gb|CI019463.1|CI019463
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|8956550|gb|BE230465.1|BE230465
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|88489580|gb|CI426852.1|CI426852
EST:     CCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: CCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|11610356|gb|AU166032.1|AU166032
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|87013601|gb|CI267302.1|CI267302
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|58695967|gb|CK084654.1|CK084654
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCGGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|88955437|gb|CI091529.1|CI091529
EST:     AACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: AACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|86423420|gb|CI062181.1|CI062181
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|88517623|gb|CI445277.1|CI445277
EST:     CGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: CGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|88490235|gb|CI427507.1|CI427507
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|88743395|gb|CI766903.1|CI766903
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|29689672|gb|CB685947.1|CB685947
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|86529539|gb|CI169745.1|CI169745
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|3766898|gb|AU031008.1|AU031008
EST:     CGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: CGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|87013532|gb|CI267233.1|CI267233
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|88847969|gb|CI006155.1|CI006155
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|88490902|gb|CI428174.1|CI428174
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|3762685|gb|AU029437.1|AU029437
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|86824350|gb|CI262903.1|CI262903
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|38474190|gb|CF958322.1|CF958322
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTNAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|87013602|gb|CI267303.1|CI267303
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|86593782|gb|CI266462.1|CI266462
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|87024811|gb|CI261320.1|CI261320
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|8857519|gb|AU094837.1|AU094837
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|25802948|gb|CA758909.1|CA758909
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|88542663|gb|CI472005.1|CI472005
EST:     CACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: CACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|58668844|gb|CK057530.1|CK057530
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
EST: gi|2442320|gb|C74091.1|C74091
EST:     GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTG                         GTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA
genomic: GGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 67 (downstream exon)
Score: 50

GTTCTTGATGAAGCTGAACAACGAGACGGTAACGATCGAGCTCAAGAACGGCACCACCGTCCATGGCACCATCACTGgtacgatgtc ... tattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGAAAGGGAAAAATCCTGTTACCTTTGATCACCTCAGTGTGAGGGGAAACAA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtgactccattatactccatatgcacatcctaacttccaggtctattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGAAAGGGAAAAATCCTGTTACCTTTGATCACCTCAGTGTGAGGGGAAACAA
                             tcctaac  putative branch site (score: 50)
                                           tctatttt  putative PPT
                                             tattttgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcagcagagctattctcatgcggtcatgcctataatcacctccataagtgactccattatactccatatgcacatcctaacttccaggtctattttgtagGTGTTGATATCAGCATGAACACGCACCTGAAAACTGTGAAACTCACATTGAAAGGGAAAAATCCTGTTACCTTTGATCACCTCAGTGTGAGGGGAAACAA

-cagcaga
- - - - - - - ctcatgc
- - - - - - - - - - - - catgcct
- - - - - - - - - - - - - - - - - - cacctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcac