1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgctggaccttgaccagaagcttggattgaagactcaggggctgcattttcattgaactcaggtgattgccacgataactgatggaaacggcactgcagATGTGGGTGACAAAGCGACTCGGAATTACGGTTCTAATCGTCCTCTTCCCTCTGCTGATTGTGCATCATCTGATAGTGAATAGCCCAGTGTCAGGGCCAT
species | Oryza sativa |
transcript | LOC_Os02g36770.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
cattttcattgaactcaggtgattgccacgataactgatggaaacggcactgcagATGTGGGTGACAAAGCGACTCGGAATTACGGTTCTAATCGTCCTCTTCCCTCTGCTGATTGTGCATCATCTGATAGTGAATAGCCCAGTGTCAGGGCCAT
aactgat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgctggaccttgaccagaagcttggattgaagactcaggggctgcattttcattgaactcaggtgattgccacgataactgatggaaacggcactgcagATGTGGGTGACAAAGCGACTCGGAATTACGGTTCTAATCGTCCTCTTCCCTCTGCTGATTGTGCATCATCTGATAGTGAATAGCCCAGTGTCAGGGCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
atgctgg
- - - - - - -accagaa
- - - - - - - - - - gcttgga
- - - - - - - - - - - - - - - - - - - -gggctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgg