1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcattcttcttttttttttaatatggattggactcctttatcctgatctgcctcaatgatactgaacagttttgacatgcttgtttatgttgttctttagTGGTCCAGTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTGGCGAGTTTTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAAT
species | Oryza sativa |
transcript | LOC_Os02g35700.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAG TGGTCCAGTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTGEST: gi|88590970|gb|CI707873.1|CI707873
genomic: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGgtacctttgt ... tgttctttagTGGTCCAGTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTG
EST: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAG TGGTCCAGTTCTCGTTATGEST: gi|88463367|gb|CI695828.1|CI695828
genomic: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGgtacctttgt ... tgttctttagTGGTCCAGTTCTCGTTATG
EST: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAG TGGTCCAGTTCTEST: gi|88468942|gb|CI696950.1|CI696950
genomic: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGgtacctttgt ... tgttctttagTGGTCCAGTTCT
EST: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAG TGGTCCAGTTCTCGTTAT
genomic: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGgtacctttgt ... tgttctttagTGGTCCAGTTCTCGTTAT
atctgcctcaatgatactgaacagttttgacatgcttgtttatgttgttctttagTGGTCCAGTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTGGCGAGTTTTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAAT
ttttgac putative branch site (score: 11)
ttgttcttt putative PPT
ttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattcttcttttttttttaatatggattggactcctttatcctgatctgcctcaatgatactgaacagttttgacatgcttgtttatgttgttctttagTGGTCCAGTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTGGCGAGTTTTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
-cattctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcttg