1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taaattttttttgtgtatatccttgaaattgcaaaaatatgtttgtatcttagttgctcgatttagaggttgctcacttaacaaatgacacatattgcagTGTCATTGTGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATCACTGGAGCCAATTCTTCGTAGAGTT
species | Oryza sativa |
transcript | LOC_Os02g35470.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGACGACGACCATGCGTGCCAAGCGGCCTCGCGTGCCCGCTCTCGCAAG TGTCATTGTGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATCEST: gi|29675099|gb|CB671374.1|CB671374
genomic: ACGACGACGACCATGCG-GCCAAGCGGCCTCGCGTGCCCGCTCTCGCAAGgtgatactat ... catattgcagTGTCATTGTGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATC
EST: ACGACGACGACCATGCGGCCAAGCGGCCTCGCGTGCCCGCTCTCGCAAG TGTCATTGTGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATCEST: gi|29674900|gb|CB671175.1|CB671175
genomic: ACGACGACGACCATGCGGCCAAGCGGCCTCGCGTGCCCGCTCTCGCAAGgtgatactat ... catattgcagTGTCATTGTGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATC
EST: GCCTCGCGTGCCCGCTCTCGCAAG TGTCATTGTGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATCEST: gi|29677880|gb|CB674155.1|CB674155
genomic: GCCTCGCGTGCCCGCTCTCGCAAGgtgatactat ... catattgcagTGTCATTGTGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATC
EST: ACGACGACGACCATGCGGCCAAGCGGCCTCGCGTGCCCGCTCTCGCAAG TGTCATTGTGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATCEST: gi|29630082|gb|CB635091.1|CB635091
genomic: ACGACGACGACCATGCGGCCAAGCGGCCTCGCGTGCCCGCTCTCGCAAGgtgatactat ... catattgcagTGTCATTGTGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATC
EST: ACGACGACGACCATGCGGCCAAGCGGCCTCGCGTGCCCGCTCTCGCAAG TGTCATTGTGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATCEST: gi|58686392|gb|CK075079.1|CK075079
genomic: ACGACGACGACCATGCGGCCAAGCGGCCTCGCGTGCCCGCTCTCGCAAGgtgatactat ... catattgcagTGTCATTGTGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATC
EST: ACGACGACGACCATGCGTGCCAAGCGGCCTCGCGTGCCCGCTCTCGCAAG TGTCATTGTAGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATEST: gi|29635770|gb|CB640779.1|CB640779
genomic: ACGACGACGACCATGCG-GCCAAGCGGCCTCGCGTGCCCGCTCTCGCAAGgtgatactat ... catattgcagTGTCATTGT-GGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCAT
EST: ACGACGACGACCATGCGGCCAAGCGGCCTCGCGTGCCCGCTCTCGCAAG TGTCATTGTGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATCEST: gi|29626070|gb|CB631081.1|CB631081
genomic: ACGACGACGACCATGCGGCCAAGCGGCCTCGCGTGCCCGCTCTCGCAAGgtgatactat ... catattgcagTGTCATTGTGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATC
EST: ACGACGACGACCATGCGGCCAAGCGGCCTCGCGTGCCCGCTCTCGCAAG TGTCATTGTGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATCEST: gi|29629686|gb|CB634695.1|CB634695
genomic: ACGACGACGACCATGCGGCCAAGCGGCCTCGCGTGCCCGCTCTCGCAAGgtgatactat ... catattgcagTGTCATTGTGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATC
EST: ACGACGACGACCATGCGGCCAAGCGGCCTCGCGTGCCCGCTCTCGCAAG TGTCATTGTGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATC
genomic: ACGACGACGACCATGCGGCCAAGCGGCCTCGCGTGCCCGCTCTCGCAAGgtgatactat ... catattgcagTGTCATTGTGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATC
tatcttagttgctcgatttagaggttgctcacttaacaaatgacacatattgcagTGTCATTGTGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATCACTGGAGCCAATTCTTCGTAGAGTT
ttaacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaattttttttgtgtatatccttgaaattgcaaaaatatgtttgtatcttagttgctcgatttagaggttgctcacttaacaaatgacacatattgcagTGTCATTGTGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATCACTGGAGCCAATTCTTCGTAGAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC