1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttcccccttttttttttgacaacaggcaaatatattgaccttttccattttcatattggtatttttttggctaattatccattttaatatctctaatagGATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTAAGTGTATGAGTATGGCCAAGGATGGGATACATGCAGTGCTGATGGTTTT
species | Oryza sativa |
transcript | LOC_Os02g35130.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTAEST: gi|33380835|gb|CF196178.1|CF196178
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTA
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTAEST: gi|88333408|gb|CI642445.1|CI642445
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTA
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTACATCTEST: gi|88592598|gb|CI710710.1|CI710710
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTACATCT
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTACATCTGAEST: gi|88424310|gb|CI581865.1|CI581865
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTACATCTGA
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTACATCTGAGGAEST: gi|88381562|gb|CI682222.1|CI682222
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTACATCTGAGGA
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTAEST: gi|88761356|gb|CI770912.1|CI770912
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTA
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTACATCTGAGGATGCCEST: gi|88329563|gb|CI648627.1|CI648627
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTACATCTGAGGATGCC
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTAEST: gi|88348617|gb|CI634212.1|CI634212
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTA
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTAEST: gi|88336951|gb|CI627031.1|CI627031
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTA
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTAEST: gi|88342052|gb|CI644389.1|CI644389
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTA
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTAEST: gi|29678306|gb|CB674581.1|CB674581
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTA
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTAEST: gi|88327626|gb|CI646819.1|CI646819
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTA
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTACATCTGAGGATGEST: gi|88744424|gb|CI767784.1|CI767784
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTACATCTGAGGATG
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTACATCTGAEST: gi|88329955|gb|CI652342.1|CI652342
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTACATCTGA
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTAEST: gi|88761455|gb|CI771011.1|CI771011
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTA
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTAEST: gi|88733176|gb|CI756353.1|CI756353
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTA
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCEST: gi|88344317|gb|CI655711.1|CI655711
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACC
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTAEST: gi|88735635|gb|CI759143.1|CI759143
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTA
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGEST: gi|33675112|gb|CF303351.1|CF303351
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAG
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTAEST: gi|33684157|gb|CF312396.1|CF312396
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTA
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTAEST: gi|88340780|gb|CI636940.1|CI636940
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTA
EST: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAG GATTATTTGAAATGACCATTACATCTGAGGATGCCGGT
genomic: CAGCACCGCGCTAAAGGATGGCCGTACCCTCAATGTTATTGATACGCCAGgtaagcatgc ... tctctaatagGATTATTTGAAATGACCATTACATCTGAGGATGCCGGT
ccattttcatattggtatttttttggctaattatccattttaatatctctaatagGATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTAAGTGTATGAGTATGGCCAAGGATGGGATACATGCAGTGCTGATGGTTTT
ttttaat putative branch site (score: 34)
tatctct CT-rich tract
taattatccattttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcccccttttttttttgacaacaggcaaatatattgaccttttccattttcatattggtatttttttggctaattatccattttaatatctctaatagGATTATTTGAAATGACCATTACATCTGAGGATGCCGGTAAAGAAATTGTTAAGTGTATGAGTATGGCCAAGGATGGGATACATGCAGTGCTGATGGTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - -caggcaa