1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tggatgttagatgtacctgaagttgtgtagcctgttctaaccctgaggttagttattgtatgtaacatggttaatttttagttccctttttcattttcagGGTCTTGACATTTCTAATCCATTTCCAATGGGGCAACTGAATTATGGAGGAGTGCAGTCACAACCAGGCCTATGCCCAAGCTTACCTACTGTATCAAGA
species | Oryza sativa |
transcript | LOC_Os02g33750.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TACAATATACCATGTTGGATGCTGCTCAACCTGGAAATGTTCTATTTCAG GGTCTTGACATTTCTAATCCATTTCCAATGGGGCAACTGAATTATGGAGGA
genomic: TACAATATACCATGTTGGATGCTGCTCAACCTGGAAATGTTCTATTTCAGgtaatttcag ... tcattttcagGGTCTTGACATTTCTAATCCATTTCCAATGGGGCAACTGAATTATGGAGGA
aggttagttattgtatgtaacatggttaatttttagttccctttttcattttcagGGTCTTGACATTTCTAATCCATTTCCAATGGGGCAACTGAATTATGGAGGAGTGCAGTCACAACCAGGCCTATGCCCAAGCTTACCTACTGTATCAAGA
tttttagttccctttt CT-rich tract
ttaatttttagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggatgttagatgtacctgaagttgtgtagcctgttctaaccctgaggttagttattgtatgtaacatggttaatttttagttccctttttcattttcagGGTCTTGACATTTCTAATCCATTTCCAATGGGGCAACTGAATTATGGAGGAGTGCAGTCACAACCAGGCCTATGCCCAAGCTTACCTACTGTATCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - gtacctg
- - - - - - - - - - - - - - - cctgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggtt