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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttctcgtgtagttcaaaacttatgaatttattcttattctccagtctttccctccctttttgctttatgtattgaaactaaaactttgtgctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTTCTAAGGAAACTCTGCATAGGAAAG

Basic information

species Oryza sativa
transcript LOC_Os02g32350.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g32350.2 (Oryza sativa), 3'ss of exon 2
lower sequence: AC207890.3_FGT002 (Zea mays), 3'ss of exon 1
tttctcgtgtagttcaaaacttatgaatttattcttattctccagtctttccctccctttt-tgctttatgtattgaaactaaaactttgtgctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTTCTAAGGAAACTCTGCATAGGAAAG
|| | | |  |  |    ||| | |  |  ||| |   |      | |||  |||  || | |   || | | ||     |     ||  || || || ||||||||||||||||||| || || || ||||| ||||||||||| |||||||||||||| || || ||||| |||
ttgcactttgaactatgtactca-gtttcaattgtagcttcttgatattttactcatttctctagattttattttttgcttgtttattcatggtgttctagGCTCGCCGTGGTGGAGTTGACGAGCCCTTTGCATGGGAAAGCAGAGAGTTTCTAAGGAAGCTTTGTATAGGGAAG

upper sequence: LOC_Os02g32350.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G136296_T02 (Zea mays), 3'ss of exon 2
tttctcgtgtagttcaaaacttatgaatt-ta--ttcttattctccagtctttccctccctttt-tgctttatgtattgaaactaaaactttgtgctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTTCTAAGGAAACTCTGCATAGGAAAG
    | |     || |     ||| |||| ||  |||||           ||   |||  || | |  |||   | ||     |     ||  || ||||  ||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||| ||||| ||||||||||| |||
----tggaactatttactgagtatcaattgtagcttcttgacaattgacattcttctcatttctctagttttcatttttcgcttgtttattcatggtgctatagGCTCGTCGTGGTGGAGTTGATGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAG

upper sequence: LOC_Os02g32350.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA04G38010.1 (Glycine max), 3'ss of exon 2
------tttctcgtgtagttcaaaacttatgaatttattctt--attctccagtctttccctccctttt---tgctttatgtattgaaactaaaacttt---gtgctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTTCTAAGGAAACTCTGCATAGGAAAG
      ||  |  | |   |         || ||| |||  |  |||    | | |    |||  | ||   ||||||| || |||    |     |||   |   |  |  |||| ||  | ||||| ||||| || || ||||| ||||||||||| |||||||| ||||| ||||||||||| |||
gtacttttagttatttgactttttttcattggattaattaatcaattaaataatttaaggctctgtgttaattgcttta-gtgttgttttttttttttttgcgaattattgtagGCGCGTAGAGGTGGTGTGGACGAGCCTTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAG

upper sequence: LOC_Os02g32350.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA06G17050.4 (Glycine max), 3'ss of exon 2
------tttctcgtgtagttcaaaacttatgaatttattctt--attctccagtctttccctccctttt---tgcttta-tgtattgaaactaaaactttgtg--ctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTTCTAAGGAAACTCTGCATAGGAAAG
      ||  |  | |   |         || ||| |||  |  |||    | | |    ||   | ||   ||||||| ||| ||     |     |||| |   ||    |||| ||  | ||||| ||||| || || ||||| ||||||||||| |||||||| ||||| ||||||||||| |||
gtagttttagttatttgactttttttcattggattaattaatcaattaaataatttaaagctttgtgttaattgctttagtgttttttttttttttttttgcgaattgtggtagGCGCGTAGAGGTGGTGTGGACGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAG

upper sequence: LOC_Os02g32350.2 (Oryza sativa), 3'ss of exon 2
lower sequence: AT5G61780.1 (Arabidopsis thaliana), 3'ss of exon 2
------tttctcgtgtagttcaaaacttatgaatttattcttattctccagtctttcc--ctccctttttgctt--tatgtattgaaactaaaactttgtgct-gctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTTCTAAGGAAACTCTGCATAGGAAAG
      ||| |     |         ||    |  | || ||| |  | |   ||| |   | | |   | |||  ||||| |   |        ||||   | | |  |||||||| | || ||  | ||||| || ||||| |||||||||||||||||||||||||| || ||||| ||||||
gtcagctttgttaaaaaagcattccttttcacaactctttttactaacaaaagttttcaatttcatagctacttattatgtttctcattgtttggtttgcctttgtttcagGCTCGCAGAGGAGGTATAGATGAGCCTTTTGCATGGGAAAGCAGGGAGTTTCTAAGGAAGCTTTGCATTGGAAAG

upper sequence: LOC_Os02g32350.2 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv14s0068g00720.t01 (Vitis vinifera), 3'ss of exon 1
tttctcgtg--tagttcaaaacttat-gaatttattct---tattctccagtctttccctccctttttgctttatgtattgaaactaaaactttgtgctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTTCTAAGGAAACTCTGCATAGGAAAG
|||  | |   || | | | |||| |  |||  |||||   |||||   | ||||   ||      |  | | || | ||     | ||  | | |    ||  |||| ||  | |||||  | |||||||||||||| ||||| || || |||| | | |||||||||||||||||||||
tttggcattactaataccacactttttaaatgaattctctatattccatactcttattctgtaccctgacctgatttttt-----tgaatatctat-tgactatagGCCCGTAGAGGTGGTATTGATGAACCATTTGCATGGGATAGTAGAGAGTATTTGAGGAAACTCTGCATAGGAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88359561|gb|CI621092.1|CI621092
EST:     CGCCGCATGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGAT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGAT
EST: gi|88402526|gb|CI598753.1|CI598753
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTTGGATTAACCATT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGT-GGATGAACCATT
EST: gi|88740782|gb|CI764290.1|CI764290
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGA
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGA
EST: gi|88729528|gb|CI751331.1|CI751331
EST:     CGCCGCCTGACAAGTCGATTACTCTGTCATACCTCATGGNCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGG
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGG
EST: gi|88328058|gb|CI649856.1|CI649856
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|88339855|gb|CI649112.1|CI649112
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAA
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAA
EST: gi|88372131|gb|CI641766.1|CI641766
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATT
EST: gi|29687922|gb|CB684197.1|CB684197
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|88825604|gb|CI776169.1|CI776169
EST:     CGCCGCCTGAGAAGTCCATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTG
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTG
EST: gi|88337126|gb|CI628212.1|CI628212
EST:     CGCCGCCTGACAAGTCGATTACTCTGTCATAC-TCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGA
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGA
EST: gi|29631511|gb|CB636520.1|CB636520
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|88728388|gb|CI751898.1|CI751898
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCA
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCA
EST: gi|88362026|gb|CI607026.1|CI607026
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCACAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAAACATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|88422005|gb|CI611625.1|CI611625
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGA
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGA
EST: gi|88395318|gb|CI611235.1|CI611235
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|88407953|gb|CI588982.1|CI588982
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAA
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAA
EST: gi|29622580|gb|CB627591.1|CB627591
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|88403938|gb|CI601348.1|CI601348
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GTTCGCCGTGGTGGAGTGGAT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGAT
EST: gi|88358526|gb|CI617612.1|CI617612
EST:     CGCCGCCTGACAAGTCGATTA-TCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGT
EST: gi|88355511|gb|CI679230.1|CI679230
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCCAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGC
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGC
EST: gi|88302393|gb|CI668239.1|CI668239
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGTTTGGGAAAGCAGGG
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGG
EST: gi|88362069|gb|CI607069.1|CI607069
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|88421476|gb|CI618600.1|CI618600
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|88343670|gb|CI677653.1|CI677653
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGA
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGA
EST: gi|88334150|gb|CI641201.1|CI641201
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGG
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGG
EST: gi|88411777|gb|CI571269.1|CI571269
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|88729048|gb|CI752558.1|CI752558
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGG
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGG
EST: gi|29636331|gb|CB641340.1|CB641340
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|88367108|gb|CI563872.1|CI563872
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|88390775|gb|CI611001.1|CI611001
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAAC-ATTTGCTTGGGAAAGCAGGGA
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGA
EST: gi|88338114|gb|CI677105.1|CI677105
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAANCATTTGCTTGGGAAAGCAGGGAGTGT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|88344411|gb|CI677455.1|CI677455
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGG
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGG
EST: gi|88361419|gb|CI605200.1|CI605200
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|6012905|gb|AU078722.1|AU078722
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGGAGTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGG-AGTT
EST: gi|88740987|gb|CI764495.1|CI764495
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGG
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGG
EST: gi|88354978|gb|CI615859.1|CI615859
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGG
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGG
EST: gi|29627292|gb|CB632303.1|CB632303
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|88406875|gb|CI578403.1|CI578403
EST:     CGCCGCCTGACAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|88576025|gb|CI670170.1|CI670170
EST:     GCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
genomic: GCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCC-AAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|88366489|gb|CI610634.1|CI610634
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATAACTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGAAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|88356613|gb|CI617696.1|CI617696
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGGCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|66923683|gb|CX110531.1|CX110531
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|29631684|gb|CB636693.1|CB636693
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|117240306|gb|CT842733.1|CT842733
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|95101541|gb|CI697060.1|CI697060
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGG
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGG
EST: gi|88399414|gb|CI606035.1|CI606035
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAAACATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|88427216|gb|CI586764.1|CI586764
EST:     GCCCCCCTGAGAACTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGGTGGAGTGGATGAAACATTTGCTTGGATAAAGCAGGGCAG
genomic: GCCGCC-TGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGG-TGGAGTGGATGAACCATTTGCTTGGG-AAAGCAGGG-AG
EST: gi|58680371|gb|CK069058.1|CK069058
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTT
EST: gi|88728851|gb|CI752361.1|CI752361
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGAT
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGAT
EST: gi|88742051|gb|CI765559.1|CI765559
EST:     CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTG                         GCTCGCCGTGGTGGAGTGGATGA
genomic: CGCCGCCTGAGAAGTCGATTACTCTGTCATACCTCATGGCCCCAAGGCTGgtaagattta ... gctgctcaagGCTCGCCGTGGTGGAGTGGATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttccctccctttttgctttatgtattgaaactaaaactttgtgctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTTCTAAGGAAACTCTGCATAGGAAAG
                               aactaaa  putative branch site (score: 2)
                   tttatgtattgaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttctcgtgtagttcaaaacttatgaatttattcttattctccagtctttccctccctttttgctttatgtattgaaactaaaactttgtgctgctcaagGCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTTCTAAGGAAACTCTGCATAGGAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - -cttatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaa