1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgtttcctagtctgtagtgtttattctttgtactaattctctgagattgctgccaagtctggtgagaatatatgatgctaacctgttctcttgtaaacagCTTTCAGATAGAAAAGGAGAACCAGTGAACTACCCGTTTCATAATTGCGGGGCAAGCACATCAAAACTGCCTGCTCATGTGTATCACAAG
species | Oryza sativa |
transcript | LOC_Os02g30974.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCTTCTCAGGAGTAGCATTCGTGCGTATCATGGCGACGCCGAGGAGAAG CTTTCAGATAGAAAAGGAGAACCAGTGAACTACCCGTTTCATAATTGCGGGEST: gi|8859747|gb|AU097065.1|AU097065
genomic: AGCTTCTCAGGAGTAGCATTCGTGCGTATCATGGCGACGCCGAGGAGAAGgtaaggagaa ... ttgtaaacagCTTTCAGATAGAAAAGGAGAACCAGTGAACTACCCGTTTCATAATTGCGGG
EST: AGCTTCTCAGGAGTAGCATTCGTGCGTATCATGGCGACGCCGAGGAGAAG CTTTCAGATAGAAAAGGAGAACCAGTGAACTACCCGTTTCATAATTGCGGG
genomic: AGCTTCTCAGGAGTAGCATTCGTGCGTATCATGGCGACGCCGAGGAGAAGgtaaggagaa ... ttgtaaacagCTTTCAGATAGAAAAGGAGAACCAGTGAACTACCCGTTTCATAATTGCGGG
attgctgccaagtctggtgagaatatatgatgctaacctgttctcttgtaaacagCTTTCAGATAGAAAAGGAGAACCAGTGAACTACCCGTTTCATAATTGCGGGGCAAGCACATCAAAACTGCCTGCTCATGTGTATCACAAG
tgctaac putative branch site (score: 2)
cctgttctctt CT-rich tract
aatatatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttcctagtctgtagtgtttattctttgtactaattctctgagattgctgccaagtctggtgagaatatatgatgctaacctgttctcttgtaaacagCTTTCAGATAGAAAAGGAGAACCAGTGAACTACCCGTTTCATAATTGCGGGGCAAGCACATCAAAACTGCCTGCTCATGTGTATCACAAG
- - - - - - - - - - - - - - - - - - - - - - - -tgctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct