1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagagcaggttgtacatcttccagcaactatataaactgaatgaacttttgacattgcaaacaaatgctttttatatgtagaattgcataatgttttcaagtgcagttttgaattctttcagccttttatgtagtattacttgttcatattttttaatatgcactgtagGTTCTGGAGGTTTCTCATACTTGTATGAGCCATTATGGTGGTTGGGGATGATAACTA
species | Oryza sativa |
transcript | LOC_Os02g29510.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGCTTTATTATCAAGAAAATTGGGCTCAAGAAGGCTGGGGATTCTGGGGTAAGAGCAGEST: gi|58692400|gb|CK081087.1|CK081087
genomic: CAAGCTTTATTATCAAGAAAATTGGGCTCAAGAAGGCTGGGGATTC-----T--G-G--Ggtaagagcag ... t
EST: CAAGCTTTATTATCAAGAAAATTGGGCTCAAGAAGGCTGGGGATTCTGGG GTTCTGGAGGTTTCTCATACTTGTATGAGCCATTATGGTGGTTGGGGATGAEST: gi|29681128|gb|CB677403.1|CB677403
genomic: CAAGCTTTATTATCAAGAAAATTGGGCTCAAGAAGGCTGGGGATTCTGGGgtaagagcag ... tgcactgtagGTTCTGGAGGTTTCTCATACTTGTATGAGCCATTATGGTGGTTGGGGATGA
EST: CAAGCTTTATTATCAAGAAAATTGGGCTCAAGAAGGCTGGGGATTCTGGG GTTCTGGAGGTTTCTCATACTTGTATGAGCCATTATGGTGGTTGGGGATGA
genomic: CAAGCTTTATTATCAAGAAAATTGGGCTCAAGAAGGCTGGGGATTCTGGGgtaagagcag ... tgcactgtagGTTCTGGAGGTTTCTCATACTTGTATGAGCCATTATGGTGGTTGGGGATGA
tctttcagccttttatgtagtattacttgttcatattttttaatatgcactgtagGTTCTGGAGGTTTCTCATACTTGTATGAGCCATTATGGTGGTTGGGGATGATAACTA
ttttaat putative branch site (score: 3)
ttttatgtagtattac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagcaggttgtacatcttccagcaactatataaactgaatgaacttttgacattgcaaacaaatgctttttatatgtagaattgcataatgttttcaagtgcagttttgaattctttcagccttttatgtagtattacttgttcatattttttaatatgcactgtagGTTCTGGAGGTTTCTCATACTTGTATGAGCCATTATGGTGGTTGGGGATGATAACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG