1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaaatatactggttgcttcatttggtgtttcccatcagtaatgagtagctactactatctggcaaagcatgatcaaatcatttgttctctatatctacctgaacatgtgagtgactgacatactgactaactggttggtttaatttgcagTCTGCAGTTGAAGATGAGCCAACCGGCAAGAGCAAGCTCAATCTCAAGTTCTGGCAGGATGCCGGCCCGATCGAGTGTGTCCAGCACCACATCAAGAAGG
species | Oryza sativa |
transcript | LOC_Os02g29150.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCCAAGCTTCCTCAAATGCTTCCCCAATGTCGAGACTCTCCATATCCAT TCTGCAGTTGGAAGATGAGCCAACCGGCAAGAGCAAGCTCAATCTCAAGTTEST: gi|2442810|gb|C74581.1|C74581
genomic: TTCCAAGCTTCCTCAAATGCTTCCCCAATGTCGAGACTCTCCATATCCATgtaaaatata ... taatttgcagTCTGCAGTTG-AAGATGAGCCAACCGGCAAGAGCAAGCTCAATCTCAAGTT
EST: TTCCAAGCTTCCTCAAATGCTTCCCCAATGTCGAGACTCTCCATATCCAT TCTGCAGTTGAAGATGAGCCAACCGGCAAGAGCAAGCTCAATCTCAAAGTTEST: gi|29663341|gb|CB659616.1|CB659616
genomic: TTCCAAGCTTCCTCAAATGCTTCCCCAATGTCGAGACTCTCCATATCCATgtaaaatata ... taatttgcagTCTGCAGTTGAAGATGAGCCAACCGGCAAGAGCAAGCTCAATCTCAA-GTT
EST: TTCCAAGCTTCCTCAAATGCTTCCCCAATGTCGAGACTCTCCATATCCAT TCTGCAGTTGAAGATGAGCCAACCGGCAAGAGCAAGCTCAATCTCAAGTTC
genomic: TTCCAAGCTTCCTCAAATGCTTCCCCAATGTCGAGACTCTCCATATCCATgtaaaatata ... taatttgcagTCTGCAGTTGAAGATGAGCCAACCGGCAAGAGCAAGCTCAATCTCAAGTTC
tacctgaacatgtgagtgactgacatactgactaactggttggtttaatttgcagTCTGCAGTTGAAGATGAGCCAACCGGCAAGAGCAAGCTCAATCTCAAGTTCTGGCAGGATGCCGGCCCGATCGAGTGTGTCCAGCACCACATCAAGAAGG
tttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatatactggttgcttcatttggtgtttcccatcagtaatgagtagctactactatctggcaaagcatgatcaaatcatttgttctctatatctacctgaacatgtgagtgactgacatactgactaactggttggtttaatttgcagTCTGCAGTTGAAGATGAGCCAACCGGCAAGAGCAAGCTCAATCTCAAGTTCTGGCAGGATGCCGGCCCGATCGAGTGTGTCCAGCACCACATCAAGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG