1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cttctaaacttgatgctggctgtgatttgagtatgttgctaaacgtgcatttgttctgttgtatgttagttttaatttgttctctcactttgtcatgaagGTATGAGCTCGGAAGGCAGCCTGCCAACACCAAGCTGTCAAGCAACAAGACAGTGAGGAGGGTGCGTGTCCGTGGAGGTAATGTGAAATGGAGGGCCCTC
species | Oryza sativa |
transcript | LOC_Os02g28810.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGCGCCGCGCCACGGGCGGCAAGCACAAGGCATGGCGCAAGAAGCGAAA GTATGAGCTCGGAAGGCACCCTGCCAACACCAAGCTGTCAAGCAACAAGACEST: gi|8335431|gb|BE040383.1|BE040383
genomic: AAGCGCCGCGCCACGGGCGGCAAGCAGAAGGCATGGCGCAAGAAGCGAAAgtgagtgccc ... tgtcatgaagGTATGAGCTCGGAAGGCAGCCTGCCAACACCAAGCTGTCAAGCAACAAGAC
EST: AAGCGCCGCGCCACGGGCGGCAAGCAGAAGGCATGGCGCAAAAAGCGAAA GTATGAGCTCGGAAGGCAGCCTGCCAACACCAAGCTGTCAAGCAACAAGACEST: gi|88676292|gb|CI730405.1|CI730405
genomic: AAGCGCCGCGCCACGGGCGGCAAGCAGAAGGCATGGCGCAAGAAGCGAAAgtgagtgccc ... tgtcatgaagGTATGAGCTCGGAAGGCAGCCTGCCAACACCAAGCTGTCAAGCAACAAGAC
EST: AAGCGCCGCGCCACGGGCGGCAAGCAGAAGGCATGGCGCAAGAAGCGAAA GTATGAGCTCGGAAGGCAGCCTGCCAACACCAAGCTGTCAAGCAACAAGACEST: gi|58693330|gb|CK082017.1|CK082017
genomic: AAGCGCCGCGCCACGGGCGGCAAGCAGAAGGCATGGCGCAAGAAGCGAAAgtgagtgccc ... tgtcatgaagGTATGAGCTCGGAAGGCAGCCTGCCAACACCAAGCTGTCAAGCAACAAGAC
EST: AAGCGCCGCGCCACGGGCGGCAAGCAGAAGGCATGGCGCAAAAAGCGAAA GTATGAGCTCGGAAGGCAGCCTGCCAACACCAAGCTGTCAAGCAACAAGACEST: gi|58602538|gb|CK013066.1|CK013066
genomic: AAGCGCCGCGCCACGGGCGGCAAGCAGAAGGCATGGCGCAAGAAGCGAAAgtgagtgccc ... tgtcatgaagGTATGAGCTCGGAAGGCAGCCTGCCAACACCAAGCTGTCAAGCAACAAGAC
EST: AAGCGCCGCGCCACGGGCGGCAAGCAGAAGGCATGGCGCAAAAAGCGAAA GTATGAGCTCGGAAGGCAGCCTGCCAACACCAAGCTGTCAAGCAACAAGACEST: gi|218491441|gb|FG947040.1|FG947040
genomic: AAGCGCCGCGCCACGGGCGGCAAGCAGAAGGCATGGCGCAAGAAGCGAAAgtgagtgccc ... tgtcatgaagGTATGAGCTCGGAAGGCAGCCTGCCAACACCAAGCTGTCAAGCAACAAGAC
EST: AAGCGCCGCGCCACGGGCGGCAAGCAGAAGGCATGGCGCAAAAAGCGAAA GTATGAGCTCGGAAGGCAGCCTGCCAACACCAAGCTGTCAAGCAACAAGACEST: gi|218498995|gb|FG968232.1|FG968232
genomic: AAGCGCCGCGCCACGGGCGGCAAGCAGAAGGCATGGCGCAAGAAGCGAAAgtgagtgccc ... tgtcatgaagGTATGAGCTCGGAAGGCAGCCTGCCAACACCAAGCTGTCAAGCAACAAGAC
EST: AAGCGCCGCGCCACGGGCGGCAAGCAGAAGGCATGGCGCAAAAAGCGAAA GTATGAGCTCGGAAGGCAGCCTGCCAACACCAAGCTGTCAAGCAACAAGACEST: gi|218495362|gb|FG969367.1|FG969367
genomic: AAGCGCCGCGCCACGGGCGGCAAGCAGAAGGCATGGCGCAAGAAGCGAAAgtgagtgccc ... tgtcatgaagGTATGAGCTCGGAAGGCAGCCTGCCAACACCAAGCTGTCAAGCAACAAGAC
EST: AGGCAT-GCGCAAAAAGCGAAA GTAT-AGCTCGGAAGGCAGCCTGCCAACACCAAGCTGTC-AGCAACAAGACEST: gi|58689688|gb|CK078375.1|CK078375
genomic: AGGCATGGCGCAAGAAGCGAAAgtgagtgccc ... tgtcatgaagGTATGAGCTCGGAAGGCAGCCTGCCAACACCAAGCTGTCAAGCAACAAGAC
EST: AAGCGCCGCGCCACGGGCGGCAAGCAGAAGGCATGGCGCAAAAAGCGAAA GTATGAGCTCGGAAGGCAGCCTGCCAACACCAAGCTGTCAAGCAACAAGAC
genomic: AAGCGCCGCGCCACGGGCGGCAAGCAGAAGGCATGGCGCAAGAAGCGAAAgtgagtgccc ... tgtcatgaagGTATGAGCTCGGAAGGCAGCCTGCCAACACCAAGCTGTCAAGCAACAAGAC
tgcatttgttctgttgtatgttagttttaatttgttctctcactttgtcatgaagGTATGAGCTCGGAAGGCAGCCTGCCAACACCAAGCTGTCAAGCAACAAGACAGTGAGGAGGGTGCGTGTCCGTGGAGGTAATGTGAAATGGAGGGCCCTC
ctctcac putative branch site (score: 37)
tttgttctctcacttt CT-rich tract
tatgttagttttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttctaaacttgatgctggctgtgatttgagtatgttgctaaacgtgcatttgttctgttgtatgttagttttaatttgttctctcactttgtcatgaagGTATGAGCTCGGAAGGCAGCCTGCCAACACCAAGCTGTCAAGCAACAAGACAGTGAGGAGGGTGCGTGTCCGTGGAGGTAATGTGAAATGGAGGGCCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - -tgctggc
- - - - - - - - - - tgtgatt
- - - - - - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - - - - gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttgt