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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacctcatgtcttactttatttgttttgtatttgttattatgctgcatggatgacgttttcatttgtgtttagAAAATGGAGGCAAACTAGGACATGGAAGCCCTTCAAGGGATCGACTAATATATGTTTTGACACAACTTATTGGACAACATGTGGATGTGCATGTGAAAAA

Basic information

species Oryza sativa
transcript LOC_Os02g27950.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g27950.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM5G829738_T01 (Zea mays), 3'ss of exon 2
-----------------------------------gtaaac-ctcatgtcttacttt---atttgttttgt-atttgttattatgctgc-atggatgacgttttcatttgtgtttagAAAATGGAGGCAAACTAGGACATGGAAGCCCTTCAAGGGATCGACTAATATATGTTTTGACACAACTTATTGGACAACATGTGGATGTGCATGTGAAAAA
                                    | |||  | |||  ||| | |      ||||| || |||    | |  |||   || ||| | ||||||  |  |  | |||||||||   ||||||||| |||||||||| ||| ||||| || ||||| |||||| | |||||||||||||| || |||||||| ||||||||||| ||
gtaaacatcacaccctatattaaatggcttaatacttgaacatttatgagttattgttgagaatgtttcgtcattaagaaatgagctattattgataatgttttc--tgttaataagAAAATGGCATCAAACTAGGGCATGGAAGCCATTCCAGGGACCGGCTAATCTATGTTCTAACACAACTTATTGGGCATCATGTGGACGTGCATGTGAATAA

upper sequence: LOC_Os02g27950.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G056773_T01 (Zea mays), 3'ss of exon 2
gtaaacctcatgtcttactttatttgtttt---gtatttgttattatgctgcatggatgacgttttcatttgt-gtttagAAAATGGAGGCAAACTAGGACATGGAAGCCCTTCAAGGGATCGACTAATATATGTTTTGACACAACTTATTGGACAACATGTGGATGTGCATGTGAAAAA
|||||| |||  |||||  |||  || |||   |  |      |||||   ||| | |||   | |  | | | | | || |||||    ||||||||| |||||||||| ||| ||||| |||||||| |||||| | |||||||||||||| || |||||  | ||||||||||||||
gtaaacatcacatcttatattaaatggtttaatgcttcaacatttatgagccattgttgataatgttttctattgataagGAAATGACATCAAACTAGGGCATGGAAGCCATTCGAGGGACCGACTAATCTATGTTCTAACACAACTTATTGGGCATCATGTCAACGTGCATGTGAAAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58695730|gb|CK084417.1|CK084417
EST:     CAATAAAACACAGTTGCTGAGATCTTCATCTGGTGGTTTTAGTGGTGCAG                         AAAATGGAGGCAAACTAGGACATGGAAGCCCTTCAAGGGATCGACTAATAT
genomic: CAATAAAACACAGTTGCTGAGATCTTCATCTGGTGGTTTTAGTGGTGCAGgtaaacctca ... ttgtgtttagAAAATGGAGGCAAACTAGGACATGGAAGCCCTTCAAGGGATCGACTAATAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgttttgtatttgttattatgctgcatggatgacgttttcatttgtgtttagAAAATGGAGGCAAACTAGGACATGGAAGCCCTTCAAGGGATCGACTAATATATGTTTTGACACAACTTATTGGACAACATGTGGATGTGCATGTGAAAAA
                                      ttttcattt  CT-rich tract
     ttttgtatttgttatt  TA-rich tract