Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccttctctctgtgtttatgcatgctcactagtaatacgagctgcaaacctatagttcatttgtcaggagtattgagactggtgccttaactggtcatactgtatatcctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTGTTGTTGAGCTGAACGGACGCCTCAACAAGTGTGGTGTCATCAGCCCTCG

Basic information

species Oryza sativa
transcript LOC_Os02g27760.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g27760.1 (Oryza sativa), 3'ss of exon 2
lower sequence: PP1S426_18V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaagccttctctctgtgtttatgcatgctcactagtaatacgagctgcaaacctatagttcatttgtcaggagtattgagactggtgccttaactggtcatactgtatatcctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTGTTGTTGAGCTGAACGGACGCCTCAACAAGTGTGGTGTCATCAGCCCTCG
        ||||||| | | | | |||     |||  || |  | ||    | ||     ||  |     | || ||||| |  ||       |  | |    || | |   |||  |  ||| || ||||| || |||||| ||||||||||||||||  ||||||| ||||| || ||||| || ||| |  | |||||||| ||||||||||| |||||
-------ctctctctctctctct-cat-----ctacgaaaataaactatttatcttcgcgtc--taagttgcagcattgatagcgg-------atcgttttctctcttttggctcttttcagGTTATATTGGAGAGTTTGAGCTTGTTGATGACCACCGAGCTGGCAAGATTGTGGTAGAGCTCAATGGAAGATTGAACAAGTGCGGTGTCATCAGTCCTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86423613|gb|CI062374.1|CI062374
EST:     ACCCTCATCAAAGGTGATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|88963015|gb|CI025501.1|CI025501
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86424400|gb|CI063161.1|CI063161
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86254298|gb|CI059025.1|CI059025
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|89165081|gb|CI255138.1|CI255138
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86254584|gb|CI059311.1|CI059311
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|88212501|gb|CI212141.1|CI212141
EST:     ACCCTCATCAAAGGTCATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|88490522|gb|CI427794.1|CI427794
EST:     AAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: AAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|89167787|gb|CI021486.1|CI021486
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|313080778|gb|HO213575.1|HO213575
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAGATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|88212175|gb|CI211815.1|CI211815
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|88211445|gb|CI211085.1|CI211085
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86420890|gb|CI056879.1|CI056879
EST:     TTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: TTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86423846|gb|CI062607.1|CI062607
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86422809|gb|CI060382.1|CI060382
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86530981|gb|CI171187.1|CI171187
EST:     CTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: CTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|88975441|gb|CI023692.1|CI023692
EST:     TGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATCG
genomic: TGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86905257|gb|CI283221.1|CI283221
EST:     GCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: GCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86424035|gb|CI062796.1|CI062796
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|89197047|gb|CI021887.1|CI021887
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86254480|gb|CI059207.1|CI059207
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|88208713|gb|CI208562.1|CI208562
EST:     ATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|29683279|gb|CB679554.1|CB679554
EST:     ATCAAAGGTTATCACCTTGTATCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86422789|gb|CI060362.1|CI060362
EST:     TCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: TCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|88979174|gb|CI025676.1|CI025676
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86257744|gb|CI064097.1|CI064097
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|88207899|gb|CI207748.1|CI207748
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|88241214|gb|CI241063.1|CI241063
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86422761|gb|CI060334.1|CI060334
EST:     TCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: TCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|88212968|gb|CI212817.1|CI212817
EST:     AGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: AGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|87013795|gb|CI269294.1|CI269294
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86256954|gb|CI061717.1|CI061717
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86532153|gb|CI172359.1|CI172359
EST:     ACCCTCATCAAAGGTGATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|89193408|gb|CI050706.1|CI050706
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCCAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86423022|gb|CI060595.1|CI060595
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|88242007|gb|CI241856.1|CI241856
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86534293|gb|CI174499.1|CI174499
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|88981430|gb|CI027048.1|CI027048
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|88244316|gb|CI243438.1|CI243438
EST:     CTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: CTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86258323|gb|CI064676.1|CI064676
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86602099|gb|CI260569.1|CI260569
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|88243830|gb|CI242952.1|CI242952
EST:     GCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: GCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86251654|gb|CI016943.1|CI016943
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86422735|gb|CI060308.1|CI060308
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|88207617|gb|CI207466.1|CI207466
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86257870|gb|CI064223.1|CI064223
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86423542|gb|CI062303.1|CI062303
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86601999|gb|CI260469.1|CI260469
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86846955|gb|CI283084.1|CI283084
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86499325|gb|CI141958.1|CI141958
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86254445|gb|CI059172.1|CI059172
EST:     ATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|89199067|gb|CI255333.1|CI255333
EST:     ACCCTCATCAAAGGTTATCGTCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|88209414|gb|CI209263.1|CI209263
EST:     ATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86422904|gb|CI060477.1|CI060477
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTGATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|87020304|gb|CI261168.1|CI261168
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86854324|gb|CI254269.1|CI254269
EST:     CCCTCATCAAAGGTTATCATCCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: CCCTCATCAAAGGTTATCAT-CAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86254332|gb|CI059059.1|CI059059
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86533302|gb|CI173508.1|CI173508
EST:     ACCCTCATCAAAGGTGATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86260842|gb|CI066517.1|CI066517
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|86530410|gb|CI170616.1|CI170616
EST:     CTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCGAAATTG
genomic: CTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|88214823|gb|CI212861.1|CI212861
EST:     ACCCTCATCAAAGGTGATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|87018768|gb|CI254476.1|CI254476
EST:     ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: ACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|88216302|gb|CI216151.1|CI216151
EST:     TGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: TGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
EST: gi|87028649|gb|CI266048.1|CI266048
EST:     TCATCAAGTTTCTCATCGTGATGCAGAAGCACG                         GCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG
genomic: TCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 176

AAAACAATGTACAATGCTGAGAAGCGTGGGAAGCGGCAAGTGATGATCCGACCCTCATCAAAGGTTATCATCAAGTTTCTCATCGTGATGCAGAAGCACGgtaagccttc ... ctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTGTTGTTGAGCTGAACGGACGCCTCAACAAGTGTGGTGTCATCAGCCCTCG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaggagtattgagactggtgccttaactggtcatactgtatatcctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTGTTGTTGAGCTGAACGGACGCCTCAACAAGTGTGGTGTCATCAGCCCTCG
                     ccttaac  putative branch site (score: 176)
                                         tatcctc  putative PPT
                                     tgtatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagccttctctctgtgtttatgcatgctcactagtaatacgagctgcaaacctatagttcatttgtcaggagtattgagactggtgccttaactggtcatactgtatatcctcaatgtagGCTACATTGGTGAATTTGAGTTTGTTGATGACCACCGCTCTGGCAAAATTGTTGTTGAGCTGAACGGACGCCTCAACAAGTGTGGTGTCATCAGCCCTCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA