1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gctttatgttttggatgttgagacttcgtttgtagattttctatggtttttgggcatactagttcttttcttgatgaagttcttttattcatttgtttagGGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCAGCTATCATATTCATCGATGAGGTTGATGCTATAGCAACTGCTCGTTTTG
species | Oryza sativa |
transcript | LOC_Os02g21970.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATTTATCAGAGTTGTTGGTTCAGAGTTTGTGCAGAAGTACCTGGGTGAG GGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCAEST: gi|29656423|gb|CB652698.1|CB652698
genomic: CATTTATCAGAGTTGTTGGTTCAGAGTTTGTGCAGAAGTACCTGGGTGAGgtatgttagg ... atttgtttagGGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCA
EST: CATTTATCAGAGTTGTTGGTTCAGAGTTTGTGCAGAAGTACCTGGGTGAG GGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCAEST: gi|58673134|gb|CK061820.1|CK061820
genomic: CATTTATCAGAGTTGTTGGTTCAGAGTTTGTGCAGAAGTACCTGGGTGAGgtatgttagg ... atttgtttagGGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCA
EST: CATTTATCAGAGTTGTTGGTTCAGAGTTTGTGCAGAAGTACCTGGGTGAG GGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCAEST: gi|29656424|gb|CB652699.1|CB652699
genomic: CATTTATCAGAGTTGTTGGTTCAGAGTTTGTGCAGAAGTACCTGGGTGAGgtatgttagg ... atttgtttagGGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCA
EST: CAGAGTTGTTGGTTCAGAGTTTGTGCAGAAGTACCTGGGTGAG GGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCAEST: gi|29683628|gb|CB679903.1|CB679903
genomic: CAGAGTTGTTGGTTCAGAGTTTGTGCAGAAGTACCTGGGTGAGgtatgttagg ... atttgtttagGGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCA
EST: GTGCAGAAGTACCTGGGTGAG GGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCAEST: gi|25798027|gb|CA753988.1|CA753988
genomic: GTGCAGAAGTACCTGGGTGAGgtatgttagg ... atttgtttagGGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCA
EST: CATTTATCAGAGTTGTTGGTTCAGAGTTTGTGCAGAAGTACCTGGGTGAG GGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCAEST: gi|29659073|gb|CB655348.1|CB655348
genomic: CATTTATCAGAGTTGTTGGTTCAGAGTTTGTGCAGAAGTACCTGGGTGAGgtatgttagg ... atttgtttagGGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCA
EST: CATTTATCAGAGTTGTTGGTTCAGAGTTTGTGCAGAAGTACCTGGGTGAG GGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCAEST: gi|29636555|gb|CB641564.1|CB641564
genomic: CATTTATCAGAGTTGTTGGTTCAGAGTTTGTGCAGAAGTACCTGGGTGAGgtatgttagg ... atttgtttagGGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCA
EST: AGAGTTTGTGCAGAAGTACCTGGGTGAG GGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCAEST: gi|29624298|gb|CB629309.1|CB629309
genomic: AGAGTTTGTGCAGAAGTACCTGGGTGAGgtatgttagg ... atttgtttagGGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCA
EST: CATTTATCAGAGTTGTTGGTTCAGAGTTTGTGCAGAAGTACCTGGGTGAG GGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCAEST: gi|29628785|gb|CB633796.1|CB633796
genomic: CATTTATCAGAGTTGTTGGTTCAGAGTTTGTGCAGAAGTACCTGGGTGAGgtatgttagg ... atttgtttagGGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCA
EST: CATTTATCAGAGTTGTTGGTTCAGAGTTTGTGCAGAAGTACCTGGGTGAG GGACCTAGGATEST: gi|29624228|gb|CB629239.1|CB629239
genomic: CATTTATCAGAGTTGTTGGTTCAGAGTTTGTGCAGAAGTACCTGGGTGAGgtatgttagg ... atttgtttagGGACCTAGGAT
EST: CATTTATCAGAGTTGTTGGTTCAGAGTTTGTGCAGAAGTACCTGGGTGAG GGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCA
genomic: CATTTATCAGAGTTGTTGGTTCAGAGTTTGTGCAGAAGTACCTGGGTGAGgtatgttagg ... atttgtttagGGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCA
gtttttgggcatactagttcttttcttgatgaagttcttttattcatttgtttagGGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCAGCTATCATATTCATCGATGAGGTTGATGCTATAGCAACTGCTCGTTTTG
tcttgat putative branch site (score: 79)
ttcttttattcattt putative PPT
ttttattcatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctttatgttttggatgttgagacttcgtttgtagattttctatggtttttgggcatactagttcttttcttgatgaagttcttttattcatttgtttagGGACCTAGGATGGTTCGAGATGTATTCCGTTTGGCTAAAGAGAATGCCCCAGCTATCATATTCATCGATGAGGTTGATGCTATAGCAACTGCTCGTTTTG
- - - tgttttg
- - - - - - - atgttga
- - - - - - - - - - - - - - - - - - - - - - -gtttttg