Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttgtaagaaaaagatctatctcttgtagtgaacaattcacaataatagactcctcacatgttcattaatgccaaacttattattgtctactgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGACTCTCGTGAGAAGCAGCGCAAATTTGTGGAAACCATTGAGCTGCAGATT

Basic information

species Oryza sativa
transcript LOC_Os02g21660.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g21660.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G023748_T02 (Zea mays), 3'ss of exon 2
----tcttgtaagaaaaagatctatctcttgtagtgaacaattcacaataatagactcctcacatgttcattaatgccaaacttattattgtctactgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGACTCTCGTGAGAAGCAGCGCAAATTTGTGGAAACCATTGAGCTGCAGATT
    | |  || | | | | |  |   | | |  || | |||    || | || | | |    |||     |      ||   | | ||  |   ||||| ||||||| ||||||||||| ||||||| || |||||  |   |||| | ||||| || ||||||||||||||||||||||| |||||||||||||| || |||
aaactttgctacgcacatgttagacaccgttttttgtagaat----aaaactaaaattccttgatgcaatatgcaattaattgtttcatctttctctgtttcagTAAGCTGCAGAGTGATTCTCTGAGGGACGCGATTGCCTCAATTACCAATGATTCCCGTGAGAAGCAGCGCAAATTTGTTGAAACCATTGAGCTACAAATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88362434|gb|CI623774.1|CI623774
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTTGCTAATG
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAA-TTGCTAATG
EST: gi|5443701|gb|AU064378.2|AU064378
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88736020|gb|CI759528.1|CI759528
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88383845|gb|CI631735.1|CI631735
EST:     GATCTGTGCTCGCACCACCGGCGGNGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88333144|gb|CI640987.1|CI640987
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88692249|gb|CI735824.1|CI735824
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88327185|gb|CI652225.1|CI652225
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88766064|gb|CI775154.1|CI775154
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88340060|gb|CI650507.1|CI650507
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88689122|gb|CI732698.1|CI732698
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88336001|gb|CI645602.1|CI645602
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88572661|gb|CI664232.1|CI664232
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|9886123|gb|AU063055.2|AU063055
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATNA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|218490099|gb|FG946556.1|FG946556
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88305508|gb|CI630670.1|CI630670
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88576427|gb|CI670572.1|CI670572
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88368746|gb|CI646234.1|CI646234
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88692617|gb|CI736192.1|CI736192
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88425319|gb|CI564836.1|CI564836
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88356767|gb|CI619253.1|CI619253
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88719033|gb|CI742543.1|CI742543
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88692734|gb|CI736309.1|CI736309
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88723286|gb|CI746796.1|CI746796
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|38482495|gb|CF966529.1|CF966529
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|218498145|gb|FG965353.1|FG965353
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAGATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88735618|gb|CI759126.1|CI759126
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88718306|gb|CI741395.1|CI741395
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88353931|gb|CI636129.1|CI636129
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88825647|gb|CI776212.1|CI776212
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|27554341|gb|CA998241.1|CA998241
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|33680145|gb|CF308384.1|CF308384
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88388738|gb|CI683525.1|CI683525
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|33686983|gb|CF315222.1|CF315222
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|27554339|gb|CA998239.1|CA998239
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAATCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88721641|gb|CI744940.1|CI744940
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88571440|gb|CI662813.1|CI662813
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88335611|gb|CI642835.1|CI642835
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88463451|gb|CI695914.1|CI695914
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|2311619|gb|C27774.1|C27774
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88395565|gb|CI613087.1|CI613087
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88393259|gb|CI616743.1|CI616743
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|218486730|gb|FG954848.1|FG954848
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|84117452|gb|CD151219.1|CD151219
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|33679805|gb|CF308044.1|CF308044
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|58598949|gb|CK009477.1|CK009477
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88330376|gb|CI633583.1|CI633583
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88321995|gb|CI673145.1|CI673145
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88744419|gb|CI767779.1|CI767779
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88390251|gb|CI605704.1|CI605704
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88353959|gb|CI636157.1|CI636157
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88306485|gb|CI638275.1|CI638275
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88305476|gb|CI630638.1|CI630638
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTGGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88732191|gb|CI757039.1|CI757039
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88385240|gb|CI630341.1|CI630341
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88337662|gb|CI632164.1|CI632164
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|58595647|gb|CK006175.1|CK006175
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88327563|gb|CI646756.1|CI646756
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|33681949|gb|CF310188.1|CF310188
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88736704|gb|CI760212.1|CI760212
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88347793|gb|CI655146.1|CI655146
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88328199|gb|CI650010.1|CI650010
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88357511|gb|CI623565.1|CI623565
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88694638|gb|CI738676.1|CI738676
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|2275879|gb|C24856.1|C24856
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88725299|gb|CI748558.1|CI748558
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88338746|gb|CI660517.1|CI660517
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88721140|gb|CI744439.1|CI744439
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88395102|gb|CI609418.1|CI609418
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88742554|gb|CI766062.1|CI766062
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88581619|gb|CI698819.1|CI698819
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88416052|gb|CI594164.1|CI594164
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88348830|gb|CI631917.1|CI631917
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGACCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88347625|gb|CI634310.1|CI634310
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88724651|gb|CI747910.1|CI747910
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88307973|gb|CI646408.1|CI646408
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88344584|gb|CI637193.1|CI637193
EST:     GATCTGTGCTCGCACCACCGGGGGCGCCATGAG                         TAAGTTGCAAAGTGATGCTCTGAAAAAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88346861|gb|CI628531.1|CI628531
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCAGAGAGAAGCGATCTCTCAAATGGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88347133|gb|CI631213.1|CI631213
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
EST: gi|88442788|gb|CI693794.1|CI693794
EST:     GATCTGTGCTCGCACCACCGGCGGCGCCATGAG                         TAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA
genomic: GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 72 (downstream exon)
Score: 32

GATCTGTGCTCGCACCACCGGCGGCGCCATGAGgtacggattt ... actgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGACTCTCGTGAGAAGCAGCGCAAATTTGTGGAAACCATTGAGCTGCAGATT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatagactcctcacatgttcattaatgccaaacttattattgtctactgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGACTCTCGTGAGAAGCAGCGCAAATTTGTGGAAACCATTGAGCTGCAGATT
                             aaacttattattgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcttgtaagaaaaagatctatctcttgtagtgaacaattcacaataatagactcctcacatgttcattaatgccaaacttattattgtctactgttgcagTAAGTTGCAGAGTGATGCTCTGAGAGAAGCGATCTCTCAAATTGCTAATGACTCTCGTGAGAAGCAGCGCAAATTTGTGGAAACCATTGAGCTGCAGATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - aagaaaa
- - - - - - - - - - - - - - - -gaacaat
- - - - - - - - - - - - - - - - - - - -cacaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgcca