1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tcattacgtcttcagttttctttagatcaatatggatgcattatgtgtctcaggttccattaattctgcatgattaactcctccttaaatgttcttgcagACTAGAATACAAGCTATTCGTGGTTTTCCACTTCTTGCCAAAGATGCAGAATTTGTCTCAAAAATTGCCGATATCCTTGGACAACTCCTTGCAAGTG
species | Oryza sativa |
transcript | LOC_Os02g20930.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCGCGCCATGGAGGCCATGTTCGACCTCGTCGACATGGAGGAACTCGCG ACTAGAATACAAGCTATTCGTGGTTTTCCACTTCTTGCCAAAGATGCAGAAEST: gi|86849950|gb|CI301813.1|CI301813
genomic: CGCGCGCCATGGAGGCCATGTTCGACCTCGTCGACATGGAGGAACTCGCGgtatgcactc ... gttcttgcagACTAGAATACAAGCTATTCGTGGTTTTCCACTTCTTGCCAAAGATGCAGAA
EST: CGCGCGCCATGGAGGCCATGTTCGACCTCGTCGACATGGAGGAACTCGCG ACTAGAATACAAGCTATTCGTGGTTTTCCACTTCTTGCCAAAGATGCAGAAEST: gi|29615477|gb|CB620489.1|CB620489
genomic: CGCGCGCCATGGAGGCCATGTTCGACCTCGTCGACATGGAGGAACTCGCGgtatgcactc ... gttcttgcagACTAGAATACAAGCTATTCGTGGTTTTCCACTTCTTGCCAAAGATGCAGAA
EST: CGCGCGCCATGGAGGCCATGTTCGACCTCGTCGACATGGAGGAACTCGCG ACTAGAATACAAGCTATTCGTGGTTTTCCACTTCTTGCCAAAGATGCAGAAEST: gi|29662176|gb|CB658451.1|CB658451
genomic: CGCGCGCCATGGAGGCCATGTTCGACCTCGTCGACATGGAGGAACTCGCGgtatgcactc ... gttcttgcagACTAGAATACAAGCTATTCGTGGTTTTCCACTTCTTGCCAAAGATGCAGAA
EST: CGCGCGCCATGGAGGCCATGTTCGACCTCGTCGACATGGAGGAACTCGCG ACTAGAATACAAGCTATTCGTGGTTTTCCACTTCTTGCCAAAGATGCAGAAEST: gi|29635298|gb|CB640307.1|CB640307
genomic: CGCGCGCCATGGAGGCCATGTTCGACCTCGTCGACATGGAGGAACTCGCGgtatgcactc ... gttcttgcagACTAGAATACAAGCTATTCGTGGTTTTCCACTTCTTGCCAAAGATGCAGAA
EST: CGCGCGCCATGGAGGCCATGTTCGACCTCGTCGACATGGAGGAACTCGCG ACTAGAATACAAGCTATTCGTGGTTTTCCACTTCTTGCCAAAGATGCAGAA
genomic: CGCGCGCCATGGAGGCCATGTTCGACCTCGTCGACATGGAGGAACTCGCGgtatgcactc ... gttcttgcagACTAGAATACAAGCTATTCGTGGTTTTCCACTTCTTGCCAAAGATGCAGAA
tgtctcaggttccattaattctgcatgattaactcctccttaaatgttcttgcagACTAGAATACAAGCTATTCGTGGTTTTCCACTTCTTGCCAAAGATGCAGAATTTGTCTCAAAAATTGCCGATATCCTTGGACAACTCCTTGCAAGTG
gattaac putative branch site (score: 14)
tgttctt putative PPT
attaattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattacgtcttcagttttctttagatcaatatggatgcattatgtgtctcaggttccattaattctgcatgattaactcctccttaaatgttcttgcagACTAGAATACAAGCTATTCGTGGTTTTCCACTTCTTGCCAAAGATGCAGAATTTGTCTCAAAAATTGCCGATATCCTTGGACAACTCCTTGCAAGTG
- - - - - - - - - - - - - - - - tggatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatga