Sequence
atgc intronic sequence ATGC exonic sequencegtatttctttgttgatttgaattatgttgtagtgttatgatttttctgtttgtctcaccaatttcatttcattttgtttgtagCCGTCATTTTGTTATCCCTTTGTGGAAAGGAACTGGATATACTACCATGTTCATGCAAGGTTATTACTCAGTCTTTTCCATATAGTG
Basic information
| species | Oryza sativa |
| transcript | LOC_Os02g20860.2 |
| intron # | 2 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g20860.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G011777_T02 (Zea mays), 3'ss of exon 1
gtatttctttgttgatttgaattatgttgtagtgttatgatttttctgtttgt---ctcaccaatttcatttcattttgtttgtagCCGTCATTTTGTTATCCCTTTGTGGAAAGGAACTGGATATACTACCATGTTCATGCAAGGTTATTACTCAGTCTTTTCCATATAGTG
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gtatgtttct-tcaacttttactg-gttgcagagtttgcagtaccatgattgtgaattttgtaatctaattttgtttgtcttttagCCGTCACTTTGTTATTCCGTTGTGGAAGGGAAGTGGATACACTACTATGTTCATGCAAG----------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|163927364|gb|EG713852.1|EG713852EST: AGATCAGCTACATG CCGTCATTTTGTTATCCCTTTGTGGAAAGGAACTGGATATACTACCATGTT
genomic: AGATCAGCTACATGgtatttcttt ... ttgtttgtagCCGTCATTTTGTTATCCCTTTGTGGAAAGGAACTGGATATACTACCATGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtagtgttatgatttttctgtttgtctcaccaatttcatttcattttgtttgtagCCGTCATTTTGTTATCCCTTTGTGGAAAGGAACTGGATATACTACCATGTTCATGCAAGGTTATTACTCAGTCTTTTCCATATAGTG
gtctcac putative branch site (score: 3)
tttcatttcatttt putative PPT
aatttcatttcatttt TA-rich tract
