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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagtagatcgtttgcttctcttgttttttctcatcatgtattttgtttaggaaaataatctttactttctacattactgcatttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGCATCACAACCCAGACATTGTTAAATCATGCGTGGGCATCTGCAAATCGTC

Basic information

species Oryza sativa
transcript LOC_Os02g19510.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g19510.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G006507_T02 (Zea mays), 3'ss of exon 3
gtgaagtagatcgtttgcttctcttgttttttctcatcatgtattttgtttaggaaaataatctttactttctacattactgcatttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGCATCACAACCCAGACATTGTTAAATCATGCGTGGGCATCTGCAAATCGTC
||  | | |  |  |||| ||| ||||||||  |  |||| |  ||  |||||  ||         |    |||    | ||    || ||||||||||||||||| ||||| || |||||||| ||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||   ||
gtagattcgcacacttgcctctattgtttttctttctcatatgcttgctttagagaaggggga---aaacactaatcgaatgtggctcacagCTTCACTTCCCTTCGAGTATCATATCCTATATTGAAGACAGGAACTCTGGCATCACAACCCAGACATTGTTGAACCATGCTTGGGCATCTGCAAACAATC

upper sequence: LOC_Os02g19510.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G119725_T02 (Zea mays), 3'ss of exon 3
gtgaagtagatcgtttgcttctcttgttttttctcatcatgtattttgtttaggaaaataatctttactttctacattactgcatttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGCATCACAACCCAGACATTGTTAAATCATGCGTGGGCATCTGCAAATCGTC
|| || |    |  |||| ||||||||||||     |||| || ||  |||||  ||         |    ||||  || ||    | |||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||   ||
gtaaattgacacacttgcctctcttgtttttgtgtctcatatacttgctttagagaaggggga---aaacactactctaatgtggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGCATCACAACCCAGACATTGTTGAACCATGCTTGGGCATCTGCAAACAATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58686132|gb|CK074819.1|CK074819
EST:     TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAG                         CTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
genomic: TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAGgtgaagtaga ... catttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgtattttgtttaggaaaataatctttactttctacattactgcatttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGCATCACAACCCAGACATTGTTAAATCATGCGTGGGCATCTGCAAATCGTC
                 aaaataatctttactt  TA-rich tract