1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ggataatataaaaacattttcagtaacctgttttctaatggcattataatatgagatcacttgttaaatatataacctttggtttgcccattattgtcagGAACATCTTCGATCTATTAGCTCAGCGAGAGATTTCCCCTCGAACAAAACACCAAGCTAAAAAACTTTGGAGCAAATCTCCAGGAAATGATGCTGATTCC
species | Oryza sativa |
transcript | LOC_Os02g18820.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAAGATCTAGGCAAAG GAACATCTTCGATCTATTAGCTCAGCGAGAGATTTCCCCTCGAACAAAACAEST: gi|88435271|gb|CI581991.1|CI581991
genomic: GCAAGATCTAGGCAAAGgtaattgtct ... ttattgtcagGAACATCTTCGATCTATTAGCTCAGCGAGAGATTTCCCCTCGAACAAAACA
EST: CAAGCATCGTAATCTAGATATCAAGCAACATCTGCAAGATCTAGGCAAAG GAACATCTTCGATCTATTAGCTCAGCGAGAGATTTCCCCTCGAACAAAACAEST: gi|29674170|gb|CB670445.1|CB670445
genomic: CAAGCATCGTATTCTAGATATCAAGCAACATCTGCAAGATCTAGGCAAAGgtaattgtct ... ttattgtcagGAACATCTTCGATCTATTAGCTCAGCGAGAGATTTCCCCTCGAACAAAACA
EST: CAAGCATCGTATTCTAGATATCAAGCAACATCTGCAAGATCTAGGCAAAG GAACATCTTCGATCTATTAGCTCAGCGAGAGATTTCCCCTCGAACAAAACAEST: gi|58671698|gb|CK060384.1|CK060384
genomic: CAAGCATCGTATTCTAGATATCAAGCAACATCTGCAAGATCTAGGCAAAGgtaattgtct ... ttattgtcagGAACATCTTCGATCTATTAGCTCAGCGAGAGATTTCCCCTCGAACAAAACA
EST: CAAGCATCGTATTCTAGATATCAAGCAACATCTGCAAGATCTAGGCAAAG GAACATCTTCGATCTATTAGCTCAGCGAGAGATTTCCCCTCGAACAAAACAEST: gi|87014230|gb|CI305008.1|CI305008
genomic: CAAGCATCGTATTCTAGATATCAAGCAACATCTGCAAGATCTAGGCAAAGgtaattgtct ... ttattgtcagGAACATCTTCGATCTATTAGCTCAGCGAGAGATTTCCCCTCGAACAAAACA
EST: CAAGCATCGTATTCTAGATATCAAGCAACATCTGCAAGATCTAGGCAAAG GAACATCTTCGATCTATTAGCTCAGCGAGAGATTTCCCCTCGAACAAAACA
genomic: CAAGCATCGTATTCTAGATATCAAGCAACATCTGCAAGATCTAGGCAAAGgtaattgtct ... ttattgtcagGAACATCTTCGATCTATTAGCTCAGCGAGAGATTTCCCCTCGAACAAAACA
ataatatgagatcacttgttaaatatataacctttggtttgcccattattgtcagGAACATCTTCGATCTATTAGCTCAGCGAGAGATTTCCCCTCGAACAAAACACCAAGCTAAAAAACTTTGGAGCAAATCTCCAGGAAATGATGCTGATTCC
atataac putative branch site (score: 57)
acttgttaaatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggataatataaaaacattttcagtaacctgttttctaatggcattataatatgagatcacttgttaaatatataacctttggtttgcccattattgtcagGAACATCTTCGATCTATTAGCTCAGCGAGAGATTTCCCCTCGAACAAAACACCAAGCTAAAAAACTTTGGAGCAAATCTCCAGGAAATGATGCTGATTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - -ataaaaa
- - - - - - - - - - - - - - - - - - - tggcatt