1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgggctttattttaatggaagacaaacttgtgttttttttctgagtaaaactatagaactgatcgatacgagtgcattttgtgtttttgtgattttaagAAGAGGAAGTCAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAA
species | Oryza sativa |
transcript | LOC_Os02g15970.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAACAAGAGAAGGATCCTAACGATGCGAGTCTACTGCGCTGCTGATGAAG A-G-G-AAGTCAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATEST: gi|33815594|gb|CF333649.1|CF333649
genomic: GAACAAGAGAAGGATCCTAACGATGCGAGTCTACTGCGCTGCTGATGAAGgttagtctaa ... tgattttaagAAGAGGAAGTCAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAAT
EST: GAACAAGAGAAGGATCCTAACGATGCGAGTCTACTGCGCTGCTGATGAAG AAGAGGAAGTCAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAAT
genomic: GAACAAGAGAAGGATCCTAACGATGCGAGTCTACTGCGCTGCTGATGAAGgttagtctaa ... tgattttaagAAGAGGAAGTCAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAAT
gtaaaactatagaactgatcgatacgagtgcattttgtgtttttgtgattttaagAAGAGGAAGTCAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAA
aactgat putative branch site (score: 3)
tttttgt putative PPT
tttttgtgattttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgggctttattttaatggaagacaaacttgtgttttttttctgagtaaaactatagaactgatcgatacgagtgcattttgtgtttttgtgattttaagAAGAGGAAGTCAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAA
- - - - - - - - - - -gacaaac
- - - - - - - - - - - - - - ttgtgtt
- - - - - - - - - - - - - - - - - - - tttctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcatt