1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cacatcgaagggatgagcttgtgctgttaatttttaatttccagtcaaaaacgaattgcttgttttctggtgctgtaacagtcaaaaccaaaattttcagGTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTATCCAAAGCTACTGATGATAGTCAAAGGTTATATGCAACTTCTTCTTGTG
species | Oryza sativa |
transcript | LOC_Os02g15870.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TG-CGCTGCG-TGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCG GTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTAEST: gi|33675137|gb|CF303376.1|CF303376
genomic: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCGgtgagattct ... aaattttcagGTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTA
EST: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCG GTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTAEST: gi|88573280|gb|CI664851.1|CI664851
genomic: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCGgtgagattct ... aaattttcagGTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTA
EST: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCG GTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTAEST: gi|33675745|gb|CF303984.1|CF303984
genomic: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCGgtgagattct ... aaattttcagGTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTA
EST: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCG GTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTAEST: gi|88742626|gb|CI766134.1|CI766134
genomic: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCGgtgagattct ... aaattttcagGTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTA
EST: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCG GTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGEST: gi|29675363|gb|CB671638.1|CB671638
genomic: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCGgtgagattct ... aaattttcagGTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTG
EST: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCG GTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTAEST: gi|88424077|gb|CI689779.1|CI689779
genomic: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCGgtgagattct ... aaattttcagGTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTA
EST: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCG GTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTAEST: gi|29631823|gb|CB636832.1|CB636832
genomic: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCGgtgagattct ... aaattttcagGTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTA
EST: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCG GTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTAEST: gi|88736013|gb|CI759521.1|CI759521
genomic: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCGgtgagattct ... aaattttcagGTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTA
EST: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCG GTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTAEST: gi|88765983|gb|CI775073.1|CI775073
genomic: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCGgtgagattct ... aaattttcagGTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTA
EST: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCG GTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTEST: gi|88403375|gb|CI573098.1|CI573098
genomic: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCGgtgagattct ... aaattttcagGTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTT
EST: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCG GTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTAEST: gi|88740170|gb|CI763678.1|CI763678
genomic: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCGgtgagattct ... aaattttcagGTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTA
EST: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCG GTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGEST: gi|88336165|gb|CI647359.1|CI647359
genomic: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCGgtgagattct ... aaattttcagGTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCG
EST: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCG GTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTAEST: gi|88288481|gb|CI661686.1|CI661686
genomic: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCGgtgagattct ... aaattttcagGTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTA
EST: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCG GTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTAEST: gi|88762354|gb|CI771910.1|CI771910
genomic: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCGgtgagattct ... aaattttcagGTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTA
EST: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCG GTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTAEST: gi|33654216|gb|CF276830.1|CF276830
genomic: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCGgtgagattct ... aaattttcagGTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTA
EST: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCG GTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTAEST: gi|29631793|gb|CB636802.1|CB636802
genomic: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCGgtgagattct ... aaattttcagGTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTA
EST: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCG GTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTAEST: gi|88732838|gb|CI756015.1|CI756015
genomic: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCGgtgagattct ... aaattttcagGTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTA
EST: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCG GTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAG
genomic: TGCCGCTGCGTTGCCTCTCCGAGCTGGCCCGCCGCCGGCCTGATCGCGCGgtgagattct ... aaattttcagGTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAG
caaaaacgaattgcttgttttctggtgctgtaacagtcaaaaccaaaattttcagGTTGATGCAATGAGAGTGGGGCTCCGATGTTTGATGAGCACTTGCCCGTTATCCAAAGCTACTGATGATAGTCAAAGGTTATATGCAACTTCTTCTTGTG
ctgtaac putative branch site (score: 2)
ttttc putative PPT
aaaaccaaaatttt TA-rich tract