Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccttatggacatgctagtcaaactgtccttgtagtgttgtcatgtcatgcacttccctaacctattttcacgctcaactttgtaacttgcattggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCTGCCGAGTACTCTGGTGTCAAGGTTGAGTTGGCAAAGAACTTTCAGATGG

Basic information

species Oryza sativa
transcript LOC_Os02g12800.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88675649|gb|CI729762.1|CI729762
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88973473|gb|CI717901.1|CI717901
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88593431|gb|CI713385.1|CI713385
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88351346|gb|CI627362.1|CI627362
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88730660|gb|CI754273.1|CI754273
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88402796|gb|CI613244.1|CI613244
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88389743|gb|CI626512.1|CI626512
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88354432|gb|CI624822.1|CI624822
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88972508|gb|CI717248.1|CI717248
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88724690|gb|CI747949.1|CI747949
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|33656262|gb|CF278876.1|CF278876
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|58685364|gb|CK074051.1|CK074051
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88722148|gb|CI745658.1|CI745658
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|29678878|gb|CB675153.1|CB675153
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88391242|gb|CI595496.1|CI595496
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88668271|gb|CI723010.1|CI723010
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGNGGNCCCGTCGAGATGGCGCTC                         GTATTGNATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88372777|gb|CI612705.1|CI612705
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88314792|gb|CI608251.1|CI608251
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGGGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88357098|gb|CI615985.1|CI615985
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|58599056|gb|CK009584.1|CK009584
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88325783|gb|CI648228.1|CI648228
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88356851|gb|CI619337.1|CI619337
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88430785|gb|CI596899.1|CI596899
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|58663492|gb|CK052178.1|CK052178
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|58656426|gb|CK045106.1|CK045106
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGG-CCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88314623|gb|CI606691.1|CI606691
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88370228|gb|CI585233.1|CI585233
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88668076|gb|CI722815.1|CI722815
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88668759|gb|CI719716.1|CI719716
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|58607460|gb|CK035493.1|CK035493
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88423688|gb|CI617040.1|CI617040
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGAT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGAT
EST: gi|88370462|gb|CI587852.1|CI587852
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88412219|gb|CI573495.1|CI573495
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88731450|gb|CI755063.1|CI755063
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88363687|gb|CI609044.1|CI609044
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88423568|gb|CI579280.1|CI579280
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|58652610|gb|CK041290.1|CK041290
EST:     GAAATCGAGTGAGTGGGAGCGAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|5667502|gb|AU077471.1|AU077471
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|58652699|gb|CK041379.1|CK041379
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88430286|gb|CI567305.1|CI567305
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88362359|gb|CI606549.1|CI606549
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|58673852|gb|CK062538.1|CK062538
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGG-CCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88727710|gb|CI749512.1|CI749512
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88668655|gb|CI719612.1|CI719612
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88392598|gb|CI625420.1|CI625420
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|33795619|gb|CF323679.1|CF323679
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88395559|gb|CI613081.1|CI613081
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|33797146|gb|CF324438.1|CF324438
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88372833|gb|CI597136.1|CI597136
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88422993|gb|CI615293.1|CI615293
EST:     GAAATCGAGTGAGTGGGAGCTAAGGGGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|33687433|gb|CF315672.1|CF315672
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88391164|gb|CI595418.1|CI595418
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88674113|gb|CI728226.1|CI728226
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88676535|gb|CI730648.1|CI730648
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88362086|gb|CI607086.1|CI607086
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88673829|gb|CI727942.1|CI727942
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88359484|gb|CI621015.1|CI621015
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88668453|gb|CI722319.1|CI722319
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88677135|gb|CI731248.1|CI731248
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88391578|gb|CI600767.1|CI600767
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|58653428|gb|CK042108.1|CK042108
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88677083|gb|CI731196.1|CI731196
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88357209|gb|CI616096.1|CI616096
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGGGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88719721|gb|CI743231.1|CI743231
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88668186|gb|CI722925.1|CI722925
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88665785|gb|CI715941.1|CI715941
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88397790|gb|CI583108.1|CI583108
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88904944|gb|CI712243.1|CI712243
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88726584|gb|CI750239.1|CI750239
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88314933|gb|CI609992.1|CI609992
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|58681115|gb|CK069802.1|CK069802
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88667046|gb|CI719182.1|CI719182
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: gi|88426801|gb|CI584164.1|CI584164
EST:     GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC                         GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgcacttccctaacctattttcacgctcaactttgtaacttgcattggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCTGCCGAGTACTCTGGTGTCAAGGTTGAGTTGGCAAAGAACTTTCAGATGG
                                  ttgtaac  putative branch site (score: 2)
                 tattttca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccttatggacatgctagtcaaactgtccttgtagtgttgtcatgtcatgcacttccctaacctattttcacgctcaactttgtaacttgcattggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCTGCCGAGTACTCTGGTGTCAAGGTTGAGTTGGCAAAGAACTTTCAGATGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG