Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29618295|gb|CB623307.1|CB623307EST: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGNNNNNNNGCCTATTGAG GGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
genomic: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGAAAAAAAGCCTATTGAGgtaacgtaac ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
EST:
gi|33666396|gb|CF297363.1|CF297363EST: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGNNNNNNNGCCTATTGAG GGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
genomic: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGAAAAAAAGCCTATTGAGgtaacgtaac ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
EST:
gi|88836886|gb|CI014887.1|CI014887EST: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGNNNNNNNGCCTATTGAG GGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
genomic: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGAAAAAAAGCCTATTGAGgtaacgtaac ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
EST:
gi|88457113|gb|CI531712.1|CI531712EST: AGGGTTCTACGCATTCTTCCTCCGCTCCGATGAGAAAAACCCTATTGAG GGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGGTTTGGCATTTNTCAG
genomic: AGGGTTCTACGCATTCTTCCTCCACTCCGATGAAAAAAAGCCTATTGAGgtaacgtaac ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCT-GTTTGGCATTTGTCAG
EST:
gi|84117007|gb|CD150774.1|CD150774EST: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGNNNNNNNGCCTATTGAG GGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
genomic: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGAAAAAAAGCCTATTGAGgtaacgtaac ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
EST:
gi|87018821|gb|CI256706.1|CI256706EST: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGNNNNNNNGCCTATTGAG GGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
genomic: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGAAAAAAAGCCTATTGAGgtaacgtaac ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
EST:
gi|29618228|gb|CB623240.1|CB623240EST: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGNNNNNNNGCCTATTGAG GGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
genomic: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGAAAAAAAGCCTATTGAGgtaacgtaac ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
EST:
gi|88832658|gb|CI008254.1|CI008254EST: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGNNNNNNNGCCTATTGAG GGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
genomic: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGAAAAAAAGCCTATTGAGgtaacgtaac ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
EST:
gi|568828|gb|D39677.1|D39677EST: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGNNNNNNNGCCTATTGAG GGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
genomic: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGAAAAAAAGCCTATTGAGgtaacgtaac ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggtcatctctcctgtggcagtctaattaaccctggtttgttgttcaattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGACGCCCTGTGTGTGGTAACATCTCGATCAAATTGGAGGTCGAAATTAAAT
aattaac putative branch site (score: 2)
tctaattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatttgcagtttaaattaccttgttctcggttttgtcgatatataggtcatctctcctgtggcagtctaattaaccctggtttgttgttcaattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGACGCCCTGTGTGTGGTAACATCTCGATCAAATTGGAGGTCGAAATTAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG