Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86256255|gb|CI012545.1|CI012545EST: ATGGGAGGAATTGCACACATGAACTGTCTTGCCAGAGTGGAGATGCTATG GGATAGGCCAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
genomic: ATGGGAGGAATTGCACACATGAACTGTCTTGCCAGAGTGGAGATGCTATGgtaatgatat ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
EST:
gi|50878532|gb|AF527693.1|AF527693EST: ATGGGAGGAATTGCACACATGAACTGTCTTGCCAGAGTGGAGATGCTATG GGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
genomic: ATGGGAGGAATTGCACACATGAACTGTCTTGCCAGAGTGGAGATGCTATGgtaatgatat ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
EST:
gi|16579228|gb|BI813323.1|BI813323EST: ATGGGAGGAATTGCACACATGAACTGTCTTGCCAGAGTGGAGATGCTATG GGATAGGC-AAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
genomic: ATGGGAGGAATTGCACACATGAACTGTCTTGCCAGAGTGGAGATGCTATGgtaatgatat ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
EST:
gi|88269390|gb|CI380688.1|CI380688EST: ATGGGAGGAATTGCACACATGAACTGTCTTGCCAGAGTGGAGATGCTATG GGATAGGCAAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAA
genomic: ATGGGAGGAATTGCACACATGAACTGTCTTGCCAGAGTGGAGATGCTATGgtaatgatat ... aattgtgcagGGATAGGCAAAA-TACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCA-
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggtcatctctcctgtggcagtctaattaaccctggtttgttgttcaattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGACGCCCTGTGTGTGGTAACATCTCGATCAAATTGGAGGTCGAAATTAAAT
aattaac putative branch site (score: 2)
tctaattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatttgcagtttaaattaccttgttctcggttttgtcgatatataggtcatctctcctgtggcagtctaattaaccctggtttgttgttcaattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGACGCCCTGTGTGTGGTAACATCTCGATCAAATTGGAGGTCGAAATTAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG