1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tacttatagcatttttatatgaagctattgcttgcattttagatttttttttatcaacagaattttagaactaaacaactgaaacgcctatttcttcaagTTATTGTTAAGGCTAGCAGTGGTCCCAGATATGTGGTTGGTTGCCGGAGCAAAGTGGACAAGGAGAAATTGACTTCGGGAACTCGTGTTGTTCTTGACAT
species | Oryza sativa |
transcript | LOC_Os02g10640.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTGGGCAGATCATCGGAGAGGTTCTCCGCCCTCTTGATAATGAACGTT TTATTGTTAAGGCTAGCAGTGGTCCCAGATATGTGGTTGGTTGCCGGAGCAEST: gi|2310656|gb|C26811.1|C26811
genomic: TGTTGGGCAGATCATCGGAGAGGTTCTCCGCCCTCTTGATAATGAACGTTgtaagtaaag ... tttcttcaagTTATTGTTAAGGCTAGCAGTGGTCCCAGATATGTGGTTGGTTGCCGGAGCA
EST: CATCGGAGAGGTTCTCCGCCCTCTTGATAATGAACGTT TTATTGTTAAGGCTAGCAGTGGTCCCAGATATGTGGTTGGTTGCCGGAGCA
genomic: CATCGGAGAGGTTCTCCGCCCTCTTGATAATGAACGTTgtaagtaaag ... tttcttcaagTTATTGTTAAGGCTAGCAGTGGTCCCAGATATGTGGTTGGTTGCCGGAGCA
tttttttatcaacagaattttagaactaaacaactgaaacgcctatttcttcaagTTATTGTTAAGGCTAGCAGTGGTCCCAGATATGTGGTTGGTTGCCGGAGCAAAGTGGACAAGGAGAAATTGACTTCGGGAACTCGTGTTGTTCTTGACAT
aactaaa putative branch site (score: 59)
cctatttcttc putative PPT
aattttagaactaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacttatagcatttttatatgaagctattgcttgcattttagatttttttttatcaacagaattttagaactaaacaactgaaacgcctatttcttcaagTTATTGTTAAGGCTAGCAGTGGTCCCAGATATGTGGTTGGTTGCCGGAGCAAAGTGGACAAGGAGAAATTGACTTCGGGAACTCGTGTTGTTCTTGACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - -tgaagct
- - - - - - - - - - - - - - tgcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaactaa