1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aattgtattcacttggaaatcccatcctcgatctgtgtggcatttcctttgtccccttttgttttcttgttctgacaaatatcattatgtttctctccagATGAAGATTCCAATGGTGAAATAGATCAACAAGAACTTAAGCATTGTTTTCAAAAGTTGGATATCTCATTCACAGATGAGGAGATAAAAGACCTATTTCA
species | Oryza sativa |
transcript | LOC_Os02g10470.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAAATTGACGAGAGTTTGAGAAACTGCAGAATTATCTTTCAGCAATTTG ATGAAGATTCCAATGGTGAAATAGATCAACAAGAACTTAAGCATTGTTTTCEST: gi|66924511|gb|CX111359.1|CX111359
genomic: AAAAATTGACGAGAGTTTGAGAAACTGCAGAATTATCTTTCAGCAATTTGgtgagtgcta ... ttctctccagATGAAGATTCCAATGGTGAAATAGATCAACAAGAACTTAAGCATTGTTTTC
EST: CAGAATTATCTTTCAGCAATTTG ATGAAGATTCCAATGGTGAAATAGATCAACAAGAACTTAAGCATTGTTTTCEST: gi|33693673|gb|CF321912.1|CF321912
genomic: CAGAATTATCTTTCAGCAATTTGgtgagtgcta ... ttctctccagATGAAGATTCCAATGGTGAAATAGATCAACAAGAACTTAAGCATTGTTTTC
EST: AAAAATTGACGAGAGTTTGAGAAACTGCAGAATTATCTTTCAGCAATTTG ATGAAGATTCCAATGGTGAAATAGATCAACAAGAACTTAAGCATTGTTTTC
genomic: AAAAATTGACGAGAGTTTGAGAAACTGCAGAATTATCTTTCAGCAATTTGgtgagtgcta ... ttctctccagATGAAGATTCCAATGGTGAAATAGATCAACAAGAACTTAAGCATTGTTTTC
cctttgtccccttttgttttcttgttctgacaaatatcattatgtttctctccagATGAAGATTCCAATGGTGAAATAGATCAACAAGAACTTAAGCATTGTTTTCAAAAGTTGGATATCTCATTCACAGATGAGGAGATAAAAGACCTATTTCA
ttctgac putative branch site (score: 8)
ttatgtttctctcc putative PPT
aaatatcattatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattgtattcacttggaaatcccatcctcgatctgtgtggcatttcctttgtccccttttgttttcttgttctgacaaatatcattatgtttctctccagATGAAGATTCCAATGGTGAAATAGATCAACAAGAACTTAAGCATTGTTTTCAAAAGTTGGATATCTCATTCACAGATGAGGAGATAAAAGACCTATTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - cccatcc
- - - - - - - - - - - - - - - - ctgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaata