1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagcttgatcaactactcttttctttgttacgagaaacaggatgaccatttatgaaatcactaacttctctgtttttatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCTTTTGTTCTGTGCACCATGCAAGGAATTGTGGGTTCATCTTCCGTGGGC
species | Oryza sativa |
transcript | LOC_Os02g10310.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCEST: gi|88689512|gb|CI733088.1|CI733088
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCEST: gi|4969133|gb|AU066037.1|AU066037
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCEST: gi|88691753|gb|CI733330.1|CI733330
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCEST: gi|88688199|gb|CI731775.1|CI731775
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
gagaaacaggatgaccatttatgaaatcactaacttctctgtttttatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCTTTTGTTCTGTGCACCATGCAAGGAATTGTGGGTTCATCTTCCGTGGGC
cactaac putative branch site (score: 1)
cttctctgtttttatc CT-rich tract
tgtttttatcattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcttgatcaactactcttttctttgttacgagaaacaggatgaccatttatgaaatcactaacttctctgtttttatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCTTTTGTTCTGTGCACCATGCAAGGAATTGTGGGTTCATCTTCCGTGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA