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...gaaagtatcgattaaccgcctatgttcaaaactatccaagaattatgagatcctgaggtagacttacacttttttttaatgggttctctaatctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG
species | Oryza sativa |
transcript | LOC_Os02g10310.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAG CTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGEST: gi|29664839|gb|CB661114.1|CB661114
genomic: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAGgtttcacact ... atctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTG
EST: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAG CTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGEST: gi|29636596|gb|CB641605.1|CB641605
genomic: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAGgtttcacact ... atctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTG
EST: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAG CTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGEST: gi|29672586|gb|CB668861.1|CB668861
genomic: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAGgtttcacact ... atctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTG
EST: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAG CTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGEST: gi|58597665|gb|CK008193.1|CK008193
genomic: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAGgtttcacact ... atctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTG
EST: GAAGAT-CTCTCAG CTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGEST: gi|29637361|gb|CB642370.1|CB642370
genomic: GAAGATCCTCTCAGgtttcacact ... atctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTG
EST: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAG CTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGEST: gi|29672143|gb|CB668418.1|CB668418
genomic: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAGgtttcacact ... atctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTG
EST: CGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCTAGAAGATCCTCTCAG CTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGEST: gi|29671042|gb|CB667317.1|CB667317
genomic: CGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGC-AGAAGATCCTCTCAGgtttcacact ... atctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTG
EST: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAG CTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGEST: gi|29636551|gb|CB641560.1|CB641560
genomic: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAGgtttcacact ... atctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTG
EST: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAG CTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGEST: gi|29643533|gb|CB648540.1|CB648540
genomic: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAGgtttcacact ... atctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTG
EST: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAG CTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGEST: gi|25798439|gb|CA754400.1|CA754400
genomic: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAGgtttcacact ... atctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTG
EST: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAG CTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGEST: gi|58660309|gb|CK048989.1|CK048989
genomic: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAGgtttcacact ... atctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTG
EST: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAG CTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTG
genomic: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAGgtttcacact ... atctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTG
tgagatcctgaggtagacttacacttttttttaatgggttctctaatctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG
tctttgc CT-rich tract
ttacacttttttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagtatcgattaaccgcctatgttcaaaactatccaagaattatgagatcctgaggtagacttacacttttttttaatgggttctctaatctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - -ctatgtt
- - - - - - - - - - - - - caaaacta
- - - - - - - - - - - - - - - - - - - - - - - - gatcctg