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...ttggaacatacatcatcttttgtttagttttatttacttttgttactataagaagctactcaacactgacttgctctcgtattcttcttccattgtatagTAGGCTTGCTGGGGTAGGACTGGATGGCTCTCTGGGATATGAACTCTCCAGTCTATTCTCATTGAAGACATT
species | Oryza sativa |
transcript | LOC_Os02g09740.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAAT --G-CTTGCTGGGGTAGGACTGGATGGCTCTCTGGGATATGAACTCTCCAGEST: gi|88575273|gb|CI669418.1|CI669418
genomic: GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAATgtaaagatcc ... cattgtatagTAGGCTTGCTGGGGTAGGACTGGATGGCTCTCTGGGATATGAACTCTCCAG
EST: GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAAT --G-CTTGCTGGGGTAGGACTGGATGGCTCTCTGGGATATGAACTCTCCAGEST: gi|88726154|gb|CI749809.1|CI749809
genomic: GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAATgtaaagatcc ... cattgtatagTAGGCTTGCTGGGGTAGGACTGGATGGCTCTCTGGGATATGAACTCTCCAG
EST: GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAAT TAGGCTTGCTGGGGTAGGACTGGATGGCTCTCTGGGATATGAACTCTCCAGEST: gi|88721234|gb|CI744533.1|CI744533
genomic: GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAATgtaaagatcc ... cattgtatagTAGGCTTGCTGGGGTAGGACTGGATGGCTCTCTGGGATATGAACTCTCCAG
EST: GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAAT TAGGCTTGCTGGGGTAGGACTGGATGGCTCTCTGGGATATGAACTCTCCAG
genomic: GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAATgtaaagatcc ... cattgtatagTAGGCTTGCTGGGGTAGGACTGGATGGCTCTCTGGGATATGAACTCTCCAG
ctataagaagctactcaacactgacttgctctcgtattcttcttccattgtatagTAGGCTTGCTGGGGTAGGACTGGATGGCTCTCTGGGATATGAACTCTCCAGTCTATTCTCATTGAAGACATT
cactgac putative branch site (score: 2)
cttgctctcgtattct CT-rich tract
attgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggaacatacatcatcttttgtttagttttatttacttttgttactataagaagctactcaacactgacttgctctcgtattcttcttccattgtatagTAGGCTTGCTGGGGTAGGACTGGATGGCTCTCTGGGATATGAACTCTCCAGTCTATTCTCATTGAAGACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - catacat
- - - - - - - - cttttgt
- - - - - - - - - - - - - - - - - - - - tgttact
- - - - - - - - - - - - - - - - - - - - - - - - - - -agctact