Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acatgttcctgctcttctctttcactaactttacatttaagacacaatgtgcattgtaaatcatacatggcagactcatttgttattatgtctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTT

Basic information

species Oryza sativa
transcript LOC_Os02g09600.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g09600.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G071626_T01 (Zea mays), 3'ss of exon 2
acatgttcctgctcttctctttcactaactttacatttaagacacaatgtgcattgtaaatcatacatggcagactcatttgtta-ttatgtct-----ggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTT
     |   |||  |   || ||| |   ||   |||| |  ||  ||         ||||||| ||||  | ||||| |  |||  ||||| |     |||| |||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||| || |
----atatatgca-tcagctctcaattggttattatttgaagcagtatacatgccccaaatcattcatgata-actcactgcttaactatgtttttgttggagtagGAAATTCAAACGACGTTGCGTGAGGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAAAAGTGTGATTACAGTGCAAGGATTGCTAATGAGATATGCT

upper sequence: LOC_Os02g09600.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G145996_T01 (Zea mays), 3'ss of exon 2
acatgttcctgctcttctctttcactaactttacatttaagacacaatgtgcattgtaaatcatacatggcagactcatttgtta-ttatgtct-----ggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTT
  ||  | |   ||||||| |  | |   |||  |||||| ||| |||  |      | ||  | ||||| | ||||| |  ||| |||||| |     |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| |||||||| ||||| |||||||||||||||||||| ||||
--ataatgca--tcttctcataaatttgtttt-tatttaacacagaatacgtggcacagattgttcatggta-actcactgcttaattatgttttgattggagtagGAAATTCAAACGACACTGCGTGAGGAAATCAAAAGTGCTTGCGAATACCGTCCATTTGAAAAGTGTGATTACAGCGCAAGGATTGCTAATGAGATATGTT

upper sequence: LOC_Os02g09600.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA19G35290.4 (Glycine max), 3'ss of exon 4
acatgttcctgctcttctctttcactaactttacatttaagacacaatgtgcattgtaaatcat--acatggcagactcatttgttattatgtctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTT---------
              | ||        | | | |  || | |    ||  ||   ||||| |     ||     |   |||||| || ||     |    ||||| |||||     ||||||| || ||||||||||||||||| |||||||| ||||||||||| ||||||||  || |||| || || ||||||||||||          
-----------agttacttaaagttcatcatcatgttaatgctcaaacttgtgctgtaattttgtaactctttaatttcattttttttttcaaatctttcaggacattcagGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTCACAAGAAAG

upper sequence: LOC_Os02g09600.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA19G35290.3 (Glycine max), 3'ss of exon 4
acatgttcctgctcttctctttcactaact-ttacatttaagacacaatgtgcattgtaaatcat--acatggcagactcatttgttattatgtctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTT
    || | | |  ||   |     | |   | |  || | |    ||  ||   ||||| |     ||     |   |||||| || ||     |    ||||| |||||     ||||||| || ||||||||||||||||| |||||||| ||||||||||| ||||||||  || |||| || || |||||||||||| 
---agtacttacagttacttaaagttcatcatcatgttaatgctcaaacttgtgctgtaattttgtaactctttaatttcattttttttttcaaatctttcagGACATTCAGGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTC

upper sequence: LOC_Os02g09600.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA03G32550.1 (Glycine max), 3'ss of exon 3
-acatgttcctgctcttctctttcactaactttacatttaagac-acaatgt-gcattgtaaatcatacatggcagactcatttgttattatgtctggag---cagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTT
  | | || ||  |    |   |||  |  || |   | ||        ||| |  |||||||||         |   ||||||||| |  | ||        ||||| |||||     |||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||| ||  || |||| || || |||||||||||| 
agcctattact--taaagttcatcatcatgttaatgctcaaacttgtgctgtagttttgtaaatctctt----taatttcatttgttttcttttcaaatctttcagGACATTCAGGTTGCATTGCGTGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGATTATGGTTCAAGAATAGCCAATGAGATTTGTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88210138|gb|CI209987.1|CI209987
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|88590577|gb|CI708352.1|CI708352
EST:     GCACCGAGGGCGTCGCTGGCCACTGTCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|55440965|gb|CV733796.1|CV733796
EST:     ACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: ACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|2442329|gb|C74100.1|C74100
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTNCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|86416427|gb|CI030438.1|CI030438
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|88688478|gb|CI732054.1|CI732054
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|88351553|gb|CI628773.1|CI628773
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|218479988|gb|FG966404.1|FG966404
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|88848015|gb|CI086537.1|CI086537
EST:     CTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: CTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|66914374|gb|CX101222.1|CX101222
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|88328211|gb|CI651217.1|CI651217
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|88305259|gb|CI652982.1|CI652982
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|11610301|gb|AU165977.1|AU165977
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|87005689|gb|CI284706.1|CI284706
EST:     TCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: TCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|55440963|gb|CV733795.1|CV733795
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|86602154|gb|CI260624.1|CI260624
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|55432450|gb|CV729246.1|CV729246
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|88342144|gb|CI652712.1|CI652712
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|88306390|gb|CI638174.1|CI638174
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|2311206|gb|C27361.1|C27361
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCNAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|218490431|gb|FG951006.1|FG951006
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGTGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|88237935|gb|CI237784.1|CI237784
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|9886122|gb|AU063035.2|AU063035
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|87018602|gb|CI252356.1|CI252356
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|55433584|gb|CV729901.1|CV729901
EST:     GGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|88691557|gb|CI733635.1|CI733635
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|33658699|gb|CF281312.1|CF281312
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|33658544|gb|CF281157.1|CF281157
EST:     CACCGAGGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: CACCGA-GGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|88213469|gb|CI213318.1|CI213318
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|88508045|gb|CI435551.1|CI435551
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|88571032|gb|CI662405.1|CI662405
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|88214111|gb|CI213960.1|CI213960
EST:     GAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|41882283|gb|BX927842.1|BX927842
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|427078|gb|D23156.1|D23156
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTNCGTNAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|88325197|gb|CI646618.1|CI646618
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|88327207|gb|CI652248.1|CI652248
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|88908049|gb|CI090645.1|CI090645
EST:     GCACGGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|88691273|gb|CI733857.1|CI733857
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGAC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGAC
EST: gi|55435062|gb|CV730658.1|CV730658
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|15008118|gb|AU222506.1|AU222506
EST:     GTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|33658545|gb|CF281158.1|CF281158
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
EST: gi|88328828|gb|CI646900.1|CI646900
EST:     GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAG                         GAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC
genomic: GCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 72 (downstream exon)
Score: 37

GAATCTGGCCGGGACGGTCATGGAGGAGCTGGGGAACGCCACTGGGCCCCGCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGgtacatctca ... tctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtgcattgtaaatcatacatggcagactcatttgttattatgtctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTT
                              tcatttgttattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acatgttcctgctcttctctttcactaactttacatttaagacacaatgtgcattgtaaatcatacatggcagactcatttgttattatgtctggagcagGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
acatgtt
- - - -cctgctc
- - - - - - - - - - - - - - - - - - - - -acacaat
- - - - - - - - - - - - - - - - - - - - - - - - gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacatg