1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcgcgtttcgtcagacctcaaacattggccaattttggtgtgcatgagtggttctgatgtatgtgtgaattggagtgttaattggtgggtatgtttgtagGATTGATGGGGTGGAGGATCAGTACGGCGTTCTTATAAAATTCGACACTCAGAGCTTCACGGATAGCTTCTACATGAGCTTTAACGGGAATCGGTTCTCA
species | Oryza sativa |
transcript | LOC_Os02g09060.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCTTCTGCGCATCCTGGGCCTCCCACATCCTCGAGACGCGCATCATCAG GATTGATGGGGTGGAGGATCAGTACGGCGTTCTTATAAAATTCGACACTCAEST: gi|88580349|gb|CI697269.1|CI697269
genomic: CGCTTCTGCGCATCCTGGGCCTCCCACATCCTCGAGACGCGCATCATCAGgtatcgtcgg ... atgtttgtagGATTGATGGGGTGGAGGATCAGTACGGCGTTCTTATAAAATTCGACACTCA
EST: CGCTTCTGCGCATCCTGGGCCTCCCACATCCTCGAGACGCGCATCATCAG GATTGATGGGGTGGAGGATCAGTACGGCGTTCTTATAAAATTCGACACTCAEST: gi|88587192|gb|CI704925.1|CI704925
genomic: CGCTTCTGCGCATCCTGGGCCTCCCACATCCTCGAGACGCGCATCATCAGgtatcgtcgg ... atgtttgtagGATTGATGGGGTGGAGGATCAGTACGGCGTTCTTATAAAATTCGACACTCA
EST: CGCTTCTGCGCATCCTGGGCCTCCCACATCCTCGAGACGCGCATCATCAG GATTGATGGGGTGGAGGATCAGTACGGCGTCCTTATAAAATTCGACACTCAEST: gi|88436585|gb|CI691313.1|CI691313
genomic: CGCTTCTGCGCATCCTGGGCCTCCCACATCCTCGAGACGCGCATCATCAGgtatcgtcgg ... atgtttgtagGATTGATGGGGTGGAGGATCAGTACGGCGTTCTTATAAAATTCGACACTCA
EST: CGCTTCTGCGCATCCTGGGCCTCCCACATCCTCGAGACGCGCATCATCAG GATTGATGGGGTGGAGGATCAGTACGGCGTTCTTATAAAATTCGACACTCAEST: gi|88405001|gb|CI685440.1|CI685440
genomic: CGCTTCTGCGCATCCTGGGCCTCCCACATCCTCGAGACGCGCATCATCAGgtatcgtcgg ... atgtttgtagGATTGATGGGGTGGAGGATCAGTACGGCGTTCTTATAAAATTCGACACTCA
EST: CGCTTCTGCGCATCCTGGGCCTCCCACATCCTCGAGACGCGCATCATCAG GATTGATGGGGTGGAGGATCAGTACGGCGTTCTTATAAAATTCGACACTCAEST: gi|88440811|gb|CI693379.1|CI693379
genomic: CGCTTCTGCGCATCCTGGGCCTCCCACATCCTCGAGACGCGCATCATCAGgtatcgtcgg ... atgtttgtagGATTGATGGGGTGGAGGATCAGTACGGCGTTCTTATAAAATTCGACACTCA
EST: CGCTTCTGCGCATCCTGGGCCTCCCACATCCTCGAGACGCGCATCATCAG GATTGATGGGGTGGAGGATCAGTACGGCGTTCTTATAAAATTCGACACTCAEST: gi|88378864|gb|CI681683.1|CI681683
genomic: CGCTTCTGCGCATCCTGGGCCTCCCACATCCTCGAGACGCGCATCATCAGgtatcgtcgg ... atgtttgtagGATTGATGGGGTGGAGGATCAGTACGGCGTTCTTATAAAATTCGACACTCA
EST: CGCTTCTGCGCATCCTGGGCCTCCCACATCCTCGAGACGCGCATCATCAG GATTGATGGGGTGGAGGATCAGTACGGCGTTCTTATAAAATTCGACACTCA
genomic: CGCTTCTGCGCATCCTGGGCCTCCCACATCCTCGAGACGCGCATCATCAGgtatcgtcgg ... atgtttgtagGATTGATGGGGTGGAGGATCAGTACGGCGTTCTTATAAAATTCGACACTCA
gagtggttctgatgtatgtgtgaattggagtgttaattggtgggtatgtttgtagGATTGATGGGGTGGAGGATCAGTACGGCGTTCTTATAAAATTCGACACTCAGAGCTTCACGGATAGCTTCTACATGAGCTTTAACGGGAATCGGTTCTCA
tgttaat putative branch site (score: 24)
tgttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgcgtttcgtcagacctcaaacattggccaattttggtgtgcatgagtggttctgatgtatgtgtgaattggagtgttaattggtgggtatgtttgtagGATTGATGGGGTGGAGGATCAGTACGGCGTTCTTATAAAATTCGACACTCAGAGCTTCACGGATAGCTTCTACATGAGCTTTAACGGGAATCGGTTCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT