1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtactgtacagttccacgagaaatattattaattgtttgggttttggtatgtcaggacatccttgatcaacttacttggttgtacatatagGCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCAATTTAATTAAGCATCCAAAGTTCATCAGTGATATCAAGTCCGCTATCG
species | Oryza sativa |
transcript | LOC_Os02g05630.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACG GCCATGGCGGA-CTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCAEST: gi|5803440|gb|AI978410.1|AI978410
genomic: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACGgtactgtaca ... gtacatatagGCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCA
EST: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACG GCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCAEST: gi|29668036|gb|CB664311.1|CB664311
genomic: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACGgtactgtaca ... gtacatatagGCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCA
EST: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACG GCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCAEST: gi|29639786|gb|CB644795.1|CB644795
genomic: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACGgtactgtaca ... gtacatatagGCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCA
EST: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACG GCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCAEST: gi|58670044|gb|CK058730.1|CK058730
genomic: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACGgtactgtaca ... gtacatatagGCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCA
EST: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACG GCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCAEST: gi|29666851|gb|CB663126.1|CB663126
genomic: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACGgtactgtaca ... gtacatatagGCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCA
EST: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACG GCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCAEST: gi|29688008|gb|CB684283.1|CB684283
genomic: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACGgtactgtaca ... gtacatatagGCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCA
EST: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACG GCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCAEST: gi|33680351|gb|CF308590.1|CF308590
genomic: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACGgtactgtaca ... gtacatatagGCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCA
EST: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACG GCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCAEST: gi|88445125|gb|CI589603.1|CI589603
genomic: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACGgtactgtaca ... gtacatatagGCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCA
EST: AATCGATGGTGTTGATGGAGAGAC-ATTGGATTATTTGGCGTATTCGACG GCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCAEST: gi|33675133|gb|CF303372.1|CF303372
genomic: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACGgtactgtaca ... gtacatatagGCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCA
EST: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGTCGTATTCGACG GCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCAEST: gi|29686520|gb|CB682795.1|CB682795
genomic: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACGgtactgtaca ... gtacatatagGCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCA
EST: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACG GCCATGGCGGATCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCAEST: gi|218495837|gb|FG960245.1|FG960245
genomic: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACGgtactgtaca ... gtacatatagGCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCA
EST: GGCGTA-TCGACG GCCATGGCGGAGCTCGAGCGGCTGAATATGTCAATGCAGCACCTTATTCAGEST: gi|44671917|gb|CR285351.1|CR285351
genomic: GGCGTATTCGACGgtactgtaca ... gtacatatagGCCATGGCGGAGCTCGAGCGGCTGAATATGTCAA-GCAGCACCTT-TTCAG
EST: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACG GCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCAEST: gi|29640127|gb|CB645136.1|CB645136
genomic: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACGgtactgtaca ... gtacatatagGCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCA
EST: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACG GCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCAEST: gi|29662047|gb|CB658322.1|CB658322
genomic: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACGgtactgtaca ... gtacatatagGCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCA
EST: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACG GCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCA
genomic: AATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACGgtactgtaca ... gtacatatagGCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCA
ttgggttttggtatgtcaggacatccttgatcaacttacttggttgtacatatagGCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCAATTTAATTAAGCATCCAAAGTTCATCAGTGATATCAAGTCCGCTATCG
aacttac putative branch site (score: 2)
tacatata TA-rich tract