Sequence
atgc intronic sequence ATGC exonic sequence...atgactaacatgcacgaaacaagtagatatctcattgagtgatgatttcactttccccttcttcacatccattaatattaattgtgattggttgatatagGGGTACAAGAACTTCAACAAGGCCGCCAGGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAG
Basic information
species | Oryza sativa |
transcript | LOC_Os02g04030.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g04030.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G171349_T02 (Zea mays), 3'ss of exon 2
----atgactaacatgcacgaaacaagtagatatctcattgagtgatgatttcactttccccttcttcacatccattaatattaattgtgattggttgatatagGGGTACAAGAACTTCAACAAGGCCGCCAGGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAG
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gtccgtgtcccgagtctccaccacca-tccgtctcttgctgctcgctgctgct--tgatgctttcttctcatccat-ggcgtgcgccattgttgccc-----agGGGTACAAGAACTTCAACAAGGCCGCGAGGGACCTCATCGGACGCCTCCAGAAGATCGACGGAGACAACTACCCTGAG
upper sequence: LOC_Os02g04030.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA16G24670.1 (Glycine max), 3'ss of exon 3
--------------------------------------------------------------------------------------atgactaaca-tgcacgaaacaagtagatatctcattgagtgatgatttcactttccccttcttcacatcc--attaatattaattgtgattggttgatatagGGGTACAAGAACTTCAACAAGGCCGCCAGGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAG
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gtacgtaacagaaatagtttatctattagccattccaatattgaagttaaaaaaccagcatgacaaattgaacttactatctttattcagttcacacttcaaaatgaaccttgatatctatgagaatgaaaaagaaatgtgtaaaatatgaaaaatatgatgaaaacttgctatgttttatct-cacagGGGCTTAAGAACTTCAACAAGCATGCCAGGGAGCTCATCACCCGCCTTCAGAAGATTGACGGTGACAACTACCCTGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|66932181|gb|CX119029.1|CX119029EST: CCAAGCGCCATGTCGACCAGAGCACCACCATCCTCGACGTCTCCGGCGTT GGGTACAAGAACTTCAACAAGGCCGCCAGGGATCTCATCGGCCGCCTCCAG
genomic: CCAAGCGCCATGTCGACCAGAGCACCACCATCCTCGACGTCTCCGGCGTTgtatgcctcc ... gttgatatagGGGTACAAGAACTTCAACAAGGCCGCCAGGGATCTCATCGGCCGCCTCCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcactttccccttcttcacatccattaatattaattgtgattggttgatatagGGGTACAAGAACTTCAACAAGGCCGCCAGGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAG
attaatattaattgtg TA-rich tract