1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...cttcacagtagaagtacagaacacatatgtcctgtttctttttcacagacgttttattttatttacctctttttatggtttcttgcttgcacattctcagGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAG
species | Oryza sativa |
transcript | LOC_Os02g03580.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCATAACCG GAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAAEST: gi|88301916|gb|CI667762.1|CI667762
genomic: GTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCGgtaactgatc ... acattctcagGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAA
EST: GTACTAATGATCCTGGCACGCCGCCCAAGGCAACAAAGGCATCAGAACCG GAGCAGTCTCCAGCCACTACATCTGGCACTANAGCTCCAGTTTACCCTGAAEST: gi|32948307|gb|BP184879.1|BP184879
genomic: GTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCGgtaactgatc ... acattctcagGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAA
EST: GTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCG GAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAAEST: gi|29683126|gb|CB679401.1|CB679401
genomic: GTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCGgtaactgatc ... acattctcagGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAA
EST: GTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCG GAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAA
genomic: GTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCGgtaactgatc ... acattctcagGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAA
cagacgttttattttatttacctctttttatggtttcttgcttgcacattctcagGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAG
cattctc CT-rich tract
ttttattttatttacc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcacagtagaagtacagaacacatatgtcctgtttctttttcacagacgttttattttatttacctctttttatggtttcttgcttgcacattctcagGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
cttcaca
- - - - - - - - - gaacaca
- - - - - - - - - - - - - -tgtcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttgc