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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggcctcctccgtgcccccctcccaatcgatgcgctggaacagcagtagattgcgtactaccttgcgattcgacggcattgtgttccagttcgattctgctaggttaaccatgttgattgatttgtttacttactgttcactatcgggttcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG

Basic information

species Oryza sativa
transcript LOC_Os02g02960.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10930921|gb|AU161195.1|AU161195
EST:     GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|58587706|gb|CF986014.1|CF986014
EST:     GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|58603994|gb|CK014522.1|CK014522
EST:     GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAACAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAA-AG
EST: gi|29659833|gb|CB656108.1|CB656108
EST:     GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|88760807|gb|CI770363.1|CI770363
EST:     GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|33660656|gb|CF291623.1|CF291623
EST:     GCCTCCTCCCATGGCTCGCGCGCGCTGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GCCTCCTCCCATGGCTCGCGCGCGC-GTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|88399521|gb|CI606142.1|CI606142
EST:     GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|58664968|gb|CK053654.1|CK053654
EST:     CGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: CGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|88329643|gb|CI650106.1|CI650106
EST:     GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|33659745|gb|CF282358.1|CF282358
EST:     GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|88725672|gb|CI748931.1|CI748931
EST:     GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|23514260|gb|BU673547.1|BU673547
EST:     GCCTTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GCC-TCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|88694523|gb|CI738561.1|CI738561
EST:     GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|58590816|gb|CF989124.1|CF989124
EST:     TCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTGTCGTGCTCCGGGTTTTCACAAAG
genomic: TCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|27576068|gb|CA998762.1|CA998762
EST:     GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|88352110|gb|CI613761.1|CI613761
EST:     GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGGAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|33806035|gb|CF328897.1|CF328897
EST:     GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|33658759|gb|CF281372.1|CF281372
EST:     GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|88348144|gb|CI637605.1|CI637605
EST:     GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|38468952|gb|CF953083.1|CF953083
EST:     GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGATAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|33657430|gb|CF280044.1|CF280044
EST:     GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|33653966|gb|CF276580.1|CF276580
EST:     GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCNTCCTGCTCCGGGTTTTCACAAAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTC-TCCTGCTCCGGGTTTTCACAAAG
EST: gi|5667412|gb|AU077654.1|AU077654
EST:     GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: gi|4714342|gb|AU058309.1|AU058309
EST:     GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG                         ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaccatgttgattgatttgtttacttactgttcactatcgggttcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
                       tacttac  putative branch site (score: 1)
                                            ttcttttgc  putative PPT
                atttgttta  TA-rich tract