1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gctgaaacgtgccactccatccttcgttttaattaccgcgtctatgatgaagctgaactttttttttctcgctggtttcttctgtttctcaaaagatcagATTGTGTGTGGTTGGTTTAGCTTCAGCCCATATTGCATTGAAAGAGGAAGGGGGGATAACTGCCGTTGATTTCAATGTTGGGAAGTCAGACCGCAGTGAG
species | Oryza sativa |
transcript | LOC_Os02g02810.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTTTCTCAATCCAGGACATGATCAGTATGTGTACCGCCATCCAAACGG ATTGTGTGTGGTTGGTTTAGCTTCAGCCCATATTGCATTGAAAGAGGAAGGEST: gi|88724333|gb|CI747592.1|CI747592
genomic: ACTTTCTCAATCCAGGACATGATCAGTATGTGTACCGCCATCCAAACGGgtgagctccc ... aaaagatcagATTGTGTGTGGTTGGTTTAGCTTCAGCCCATATTGCATTGAAAGAGGAAGG
EST: GTGTACCGCCATCCAAACGG ATTGTGTGTGGTTGGTTTAGCTTCAGCCCATATTGCATTGAAAGAGGAAGGEST: gi|88587806|gb|CI705581.1|CI705581
genomic: GTGTACCGCCATCCAAACGGgtgagctccc ... aaaagatcagATTGTGTGTGGTTGGTTTAGCTTCAGCCCATATTGCATTGAAAGAGGAAGG
EST: ACTTTCTCAATCCAGGACATGATCAGTATGTGTACCGCCATCCAAACGG ATTGTGTGTGGTTGGTTTAGCTTCAGCCCATATTGCATTGAAAGAGGAAGGEST: gi|88467210|gb|CI696572.1|CI696572
genomic: ACTTTCTCAATCCAGGACATGATCAGTATGTGTACCGCCATCCAAACGGgtgagctccc ... aaaagatcagATTGTGTGTGGTTGGTTTAGCTTCAGCCCATATTGCATTGAAAGAGGAAGG
EST: ACTTTCTCAATCCAGGACATGATCAGTATGTGTACCGCCATCCAAACGG ATTGTGTGTGGTTGGTTTAGCTTCAGCCCATATTGCATTGAAAGAGGAAGGEST: gi|25798079|gb|CA754040.1|CA754040
genomic: ACTTTCTCAATCCAGGACATGATCAGTATGTGTACCGCCATCCAAACGGgtgagctccc ... aaaagatcagATTGTGTGTGGTTGGTTTAGCTTCAGCCCATATTGCATTGAAAGAGGAAGG
EST: ACTTTCTCAATCCAGGACATGATCAGTATGTGTACCGCCATCCAAACGG ATTGTGTGTGGTTGGTTTAGCTTCAGCCCATATTGCATTGAAAGAGGAAGG
genomic: ACTTTCTCAATCCAGGACATGATCAGTATGTGTACCGCCATCCAAACGGgtgagctccc ... aaaagatcagATTGTGTGTGGTTGGTTTAGCTTCAGCCCATATTGCATTGAAAGAGGAAGG
gatgaagctgaactttttttttctcgctggtttcttctgtttctcaaaagatcagATTGTGTGTGGTTGGTTTAGCTTCAGCCCATATTGCATTGAAAGAGGAAGGGGGGATAACTGCCGTTGATTTCAATGTTGGGAAGTCAGACCGCAGTGAG
ctttttttttctcgct CT-rich tract
tgaacttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgaaacgtgccactccatccttcgttttaattaccgcgtctatgatgaagctgaactttttttttctcgctggtttcttctgtttctcaaaagatcagATTGTGTGTGGTTGGTTTAGCTTCAGCCCATATTGCATTGAAAGAGGAAGGGGGGATAACTGCCGTTGATTTCAATGTTGGGAAGTCAGACCGCAGTGAG
- - - acgtgcc
- - - - - - - -tccatcc
- - - - - - - - - - - - - - - - - - - - - - tgatgaa