1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaatggcactttaccctatgctcgctcttatttcctgttgttgatcactgctgcctgatctgacctgtataattattcttgcagGTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGATTGTGAACAAGGACGGTAAGCCCTACATTCAGGTCAAGATCAAGGATGGA
species | Oryza sativa |
transcript | LOC_Os02g02410.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAA GTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGATEST: gi|1631642|gb|C19371.1|C19371
genomic: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAAgtaatggcac ... attcttgcagGTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGAT
EST: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAA AEST: gi|1631642|gb|C19371.1|C19371
genomic: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAAgtaatggcac ... attcttgcag-
EST: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAA AEST: gi|29630263|gb|CB635272.1|CB635272
genomic: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAAgtaatggcac ... attcttgcag-
EST: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAA GTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGATEST: gi|88724502|gb|CI747761.1|CI747761
genomic: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAAgtaatggcac ... attcttgcagGTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGAT
EST: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAA GTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGATEST: gi|88730748|gb|CI754361.1|CI754361
genomic: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAAgtaatggcac ... attcttgcagGTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGAT
EST: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAA GTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGATEST: gi|58672968|gb|CK061654.1|CK061654
genomic: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAAgtaatggcac ... attcttgcagGTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGAT
EST: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAA GTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGATEST: gi|396941184|gb|HO188393.1|HO188393
genomic: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAAgtaatggcac ... attcttgcagGTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGAT
EST: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAA GTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGATEST: gi|29630765|gb|CB635774.1|CB635774
genomic: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAAgtaatggcac ... attcttgcagGTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGAT
EST: GTGAACCCAGATAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAA GTTTGAAGACAAGGAAGTTCACAGGGACATGAAACTTGTCCCCEST: gi|29628702|gb|CB633713.1|CB633713
genomic: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAAgtaatggcac ... attcttgcagGTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCC
EST: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAA GTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGATEST: gi|29630767|gb|CB635776.1|CB635776
genomic: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAAgtaatggcac ... attcttgcagGTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGAT
EST: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAA GTTTGAAGACAAGGAAGTTCACAGGGACATGAAACTTGTCCCCTACAAGATEST: gi|86902315|gb|CI302346.1|CI302346
genomic: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAAgtaatggcac ... attcttgcagGTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGAT
EST: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAA GTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGAT
genomic: GTGAACCCAGAGAGGACCATCTTCGATGTCAAACGTCTCATTGGAAGAAAgtaatggcac ... attcttgcagGTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGAT
atttcctgttgttgatcactgctgcctgatctgacctgtataattattcttgcagGTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGATTGTGAACAAGGACGGTAAGCCCTACATTCAGGTCAAGATCAAGGATGGA
atctgac putative branch site (score: 297)
ttattctt putative PPT
tgtataattattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatggcactttaccctatgctcgctcttatttcctgttgttgatcactgctgcctgatctgacctgtataattattcttgcagGTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGATTGTGAACAAGGACGGTAAGCCCTACATTCAGGTCAAGATCAAGGATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA