Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgatcatccagaaattaacgcctatacgatctgagttcgaagccgcagtactccttctaattaattatttaatactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGACACCAAGACATGGCCGGAGGACGAGGTGCCGCTCCGGCCCGTGGGGCGCC

Basic information

species Oryza sativa
transcript LOC_Os02g02400.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58692654|gb|CK081341.1|CK081341
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29660699|gb|CB656974.1|CB656974
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29656406|gb|CB652681.1|CB652681
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29642294|gb|CB647301.1|CB647301
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29636086|gb|CB641095.1|CB641095
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29672844|gb|CB669119.1|CB669119
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGACGAGGAGGAG
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAG
EST: gi|29672359|gb|CB668634.1|CB668634
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|58690079|gb|CK078766.1|CK078766
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29645886|gb|CB650893.1|CB650893
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29689572|gb|CB685847.1|CB685847
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29678950|gb|CB675225.1|CB675225
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29618055|gb|CB623067.1|CB623067
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGATGAGGAAGAGAGGTTCGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGAC
EST: gi|87024469|gb|CI289999.1|CI289999
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29642891|gb|CB647898.1|CB647898
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29656163|gb|CB652438.1|CB652438
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29642890|gb|CB647897.1|CB647897
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|571735|gb|D41246.1|D41246
EST:     ACGACTCCATCGCCGCCGGNAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29645450|gb|CB650457.1|CB650457
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29617987|gb|CB622999.1|CB622999
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|86830056|gb|CI288687.1|CI288687
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29617989|gb|CB623001.1|CB623001
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29669499|gb|CB665774.1|CB665774
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|58692152|gb|CK080839.1|CK080839
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29658097|gb|CB654372.1|CB654372
EST:     ACGACTCCATCGCCGCCGGCAACTTACCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCCACCCGGAGGAGGA
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGA
EST: gi|29618051|gb|CB623063.1|CB623063
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29645952|gb|CB650959.1|CB650959
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|86829915|gb|CI288589.1|CI288589
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29618028|gb|CB623040.1|CB623040
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29667027|gb|CB663302.1|CB663302
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGANGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29621187|gb|CB626198.1|CB626198
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|112785439|gb|EE590691.1|EE590691
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|58588367|gb|CF986675.1|CF986675
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|86889670|gb|CI299868.1|CI299868
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29645530|gb|CB650537.1|CB650537
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|58593167|gb|CF991475.1|CF991475
EST:     ACGACTCCATCGCCG-CGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GGGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29671652|gb|CB667927.1|CB667927
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|117233251|gb|CT848061.1|CT848061
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCC
EST: gi|29659500|gb|CB655775.1|CB655775
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29657549|gb|CB653824.1|CB653824
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29672470|gb|CB668745.1|CB668745
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|58687960|gb|CK076647.1|CK076647
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|27597112|gb|BQ529576.1|BQ529576
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGGAGGA
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGG-AGGA
EST: gi|58688988|gb|CK077675.1|CK077675
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29618053|gb|CB623065.1|CB623065
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29620652|gb|CB625663.1|CB625663
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29672772|gb|CB669047.1|CB669047
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29659253|gb|CB655528.1|CB655528
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29615182|gb|CB620195.1|CB620195
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29617991|gb|CB623003.1|CB623003
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|58692003|gb|CK080690.1|CK080690
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29615256|gb|CB620268.1|CB620268
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAG
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAG
EST: gi|29645533|gb|CB650540.1|CB650540
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29621365|gb|CB626376.1|CB626376
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|88721417|gb|CI744716.1|CI744716
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29617952|gb|CB622964.1|CB622964
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|58594498|gb|CF992806.1|CF992806
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29615190|gb|CB620203.1|CB620203
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29656327|gb|CB652602.1|CB652602
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29618984|gb|CB623996.1|CB623996
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29618030|gb|CB623042.1|CB623042
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
EST: gi|29640077|gb|CB645086.1|CB645086
EST:     ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAG                         GTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC
genomic: ACGACTCCATCGCCGCCGGCAACTTCCCCGAGTGGAAGCTGTTCGTCCAGgtaggtgatc ... atactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgatctgagttcgaagccgcagtactccttctaattaattatttaatactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGACACCAAGACATGGCCGGAGGACGAGGTGCCGCTCCGGCCCGTGGGGCGCC
                            ttctaattaattattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaggtgatcatccagaaattaacgcctatacgatctgagttcgaagccgcagtactccttctaattaattatttaatactgttagGTGATCGACCCGGAGGAGGAGGAGAGGTTCGACTTCGACCCGCTGGATGACACCAAGACATGGCCGGAGGACGAGGTGCCGCTCCGGCCCGTGGGGCGCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA